RNA–Protein interactions for RNA: ENSMUST00000053440.7

Ccdc40-202, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Ccdc40, Length 3,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-202ENSMUST00000053440 Fam163aQ8CAA5 168 aa13.07□□□□□ -0.32
Ccdc40-202ENSMUST00000053440 NeflP08551 543 aa13.06□□□□□ -0.32
Ccdc40-202ENSMUST00000053440 Mroh2aD3Z750 1679 aa13.06□□□□□ -0.32
Ccdc40-202ENSMUST00000053440 Ipo9Q91YE6 1041 aa13.05□□□□□ -0.32
Ccdc40-202ENSMUST00000053440 Rock2P70336 1388 aa13.05□□□□□ -0.32
Ccdc40-202ENSMUST00000053440 Mak16Q8BGS0 296 aaKnown RBP13.05□□□□□ -0.32
Ccdc40-202ENSMUST00000053440 Mapkbp1Q6NS57 1503 aa13.04□□□□□ -0.32
Ccdc40-202ENSMUST00000053440 Trpm2Q91YD4 1506 aa13.04□□□□□ -0.32
Ccdc40-202ENSMUST00000053440 PrkcshO08795 521 aa13.04□□□□□ -0.32
Ccdc40-202ENSMUST00000053440 Ifit1bl1D3Z6F0 470 aa13.03□□□□□ -0.32
Ccdc40-202ENSMUST00000053440 Ccdc27Q3V036 639 aa13.03□□□□□ -0.32
Ccdc40-202ENSMUST00000053440 Kank1E9Q238 1360 aa13.03□□□□□ -0.32
Ccdc40-202ENSMUST00000053440 Polr3aB2RXC6 1390 aa13.03□□□□□ -0.32
Ccdc40-202ENSMUST00000053440 Pank3Q8R2W9 370 aa13.02□□□□□ -0.32
Ccdc40-202ENSMUST00000053440 Mlh3A0A1Y7VMP7 1443 aa13.02□□□□□ -0.32
Ccdc40-202ENSMUST00000053440 Inpp5dQ9ES52 1191 aa13.02□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 Cpsf1Q9EPU4 1441 aaKnown RBP13.02□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 Dot1lQ6XZL8 1540 aa13.01□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 Asxl1P59598 1514 aa13.01□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 ChgaP26339 463 aaKnown RBP13□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 Ssh2Q5SW75 1423 aa12.99□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 DroshaQ5HZJ0 1373 aaKnown RBP12.99□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 Pbrm1Q8BSQ9 1634 aaKnown RBP12.98□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 Clstn2Q9ER65 966 aa12.98□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 Caskin1Q6P9K8 1431 aa12.98□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 Cd109Q8R422 1442 aa12.98□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 Upf2A2AT37 1269 aaKnown RBP12.98□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 Esx1O88933 382 aa12.98□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 Sart1Q9Z315 806 aaKnown RBP12.98□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 Neo1P97798 1493 aa12.98□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 B4galnt3Q6L8S8 986 aa12.97□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 Jph4Q80WT0 628 aa12.97□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 PrxO55103 1391 aa12.97□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 Erich6D3Z6S9 713 aa12.97□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 CrbnQ8C7D2 445 aa12.96□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 Atp7aQ64430 1491 aa12.96□□□□□ -0.33
Ccdc40-202ENSMUST00000053440 PtprgQ05909 1442 aa12.96□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 AknaQ80VW7 1404 aa12.96□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Iqgap1Q9JKF1 1657 aaKnown RBP12.95□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Prkrip1Q9CWV6 186 aaKnown RBP12.95□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Fmn2Q9JL04 1578 aa12.95□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Rock1P70335 1354 aa12.95□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Trappc8E9PWG2 1437 aa12.95□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Lrrc9Q8CDN9 1456 aa12.95□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Apbb1Q9QXJ1 710 aa12.94□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Zcchc11B2RX14 1644 aaKnown RBP12.94□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Kdm5cP41230 1554 aa12.94□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Mroh3A0A1D5RM54 893 aa12.94□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Kdm2aP59997 1161 aa12.94□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Zscan10Q3URR7 782 aa12.94□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Arhgap5P97393 1501 aa12.93□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Dbr1Q923B1 550 aa12.93□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Slc4a1apE9PX68 744 aa12.92□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Ttll13A4Q9F6 804 aa12.92□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Zmym4A2A791 1549 aaKnown RBP12.92□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Tarbp1E9Q368 1579 aa12.91□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Prdm10Q3UTQ7 1184 aa12.91□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Ak9G3UYQ4 1894 aa12.91□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Tmf1B9EKI3 1091 aa12.9□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Fancd2Q80V62 1450 aa12.9□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Os9Q8K2C7 672 aa12.9□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Adgrl2Q8JZZ7 1487 aa12.9□□□□□ -0.34
Ccdc40-202ENSMUST00000053440 Kif16bB1AVY7 1312 aa12.89□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Iqcf3Q9D498 203 aa12.89□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Lrriq1Q0P5X1 1673 aa12.88□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Gapvd1Q6PAR5 1458 aa12.88□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Spag9Q58A65 1321 aaKnown RBP12.88□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Mink1Q9JM52 1308 aa12.88□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Hsp90aa1P07901 733 aaKnown RBP12.88□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Eif4g3Q80XI3 1579 aaKnown RBP12.87□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Neurod2Q62414 383 aa12.87□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Ppp2r1aQ76MZ3 589 aa12.87□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Map3k5O35099 1380 aa12.87□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Fam208aQ69ZR9 1610 aaKnown RBP12.87□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Tubgcp6G5E8P0 1769 aa12.87□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 DaxxO35613 739 aa12.87□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Srcin1Q9QWI6 1250 aa12.87□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 CanxP35564 591 aaKnown RBP12.86□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Pde4cQ3UEI1 686 aa12.86□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Dnmt1P13864 1620 aaKnown RBP12.85□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Plch2A2AP18 1501 aa12.85□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Sall3Q62255 1320 aa12.85□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Hdac5Q9Z2V6 1113 aa12.85□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Setd1aE9PYH6 1716 aa12.85□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Rwdd1Q9CQK7 243 aa12.84□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 4933416C03RikQ3V063 378 aa12.84□□□□□ -0.35
Ccdc40-202ENSMUST00000053440 Speer4f1Q9D5Q6 258 aa12.83□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Adamts13Q769J6 1426 aa12.83□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Fam184bQ0KK56 942 aa12.83□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Tex14Q7M6U3 1450 aa12.83□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Nlrp6Q91WS2 869 aa12.83□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 TnikP83510 1323 aa12.82□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Gm32742A0A1B0GT42 1604 aa12.82□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Chmp5Q9D7S9 219 aa12.82□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Rab3gap2Q8BMG7 1366 aa12.81□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Rusc2Q80U22 1514 aa12.8□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Edc4Q3UJB9 1406 aaKnown RBP12.8□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Sart3Q9JLI8 962 aaKnown RBP12.8□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Mbd3Q9Z2D8 285 aaKnown RBP12.79□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 EspnQ9ET47 871 aa12.79□□□□□ -0.36
Retrieved 100 of 22,080 RNA–protein pairs in 16.2 ms