RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 EMC2Q15006 297 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 TARBP2Q15633 366 aaKnown RBP11.64□□□□□ -0.55
CLN3-248ENST00000636355 FIGNQ5HY92 759 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 FKBP15Q5T1M5 1219 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 UTP14CQ5TAP6 766 aaKnown RBP11.64□□□□□ -0.55
CLN3-248ENST00000636355 TAPT1Q6NXT6 567 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 CCDC186Q7Z3E2 898 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 FRMD5Q7Z6J6 570 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 CNGA4Q8IV77 575 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 LRRC8AQ8IWT6 810 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 GLIS3Q8NEA6 775 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 ATP8B4Q8TF62 1192 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 USP6NLQ92738 828 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 SPATA33Q96N06 139 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 ACCSQ96QU6 501 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 ERGIC2Q96RQ1 377 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 FGFBP2Q9BYJ0 223 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 GBP3Q9H0R5 595 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 SMARCAD1Q9H4L7 1026 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 EXOC7Q9UPT5 735 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 MAPK13O15264 365 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 ZNF500O60304 480 aaPredicted RBP11.63□□□□□ -0.55
CLN3-248ENST00000636355 MYBP10242 640 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 EPB41P11171 864 aaKnown RBP11.63□□□□□ -0.55
CLN3-248ENST00000636355 SP4Q02446 784 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 LRRC41Q15345 812 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 LY6KQ17RY6 165 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 CCDC144BQ3MJ40 725 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 DUSP28Q4G0W2 176 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 PLA2G4FQ68DD2 849 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 IQSEC1Q6DN90 963 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 MAP4K3Q8IVH8 894 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 TRIM59Q8IWR1 403 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 TCP11Q8WWU5 503 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 IFT74Q96LB3 600 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 PANX2Q96RD6 677 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 PCYT2Q99447 389 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 NUP58Q9BVL2 599 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 NAA15Q9BXJ9 866 aaKnown RBP11.63□□□□□ -0.55
CLN3-248ENST00000636355 CREBZFQ9NS37 354 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 ERAP1Q9NZ08 941 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 TBC1D7Q9P0N9 293 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 CPA4Q9UI42 421 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 ZNF215Q9UL58 517 aaPredicted RBP11.63□□□□□ -0.55
CLN3-248ENST00000636355 DAAM1Q9Y4D1 1078 aa11.63□□□□□ -0.55
CLN3-248ENST00000636355 KIAA0391O15091 583 aaKnown RBP11.62□□□□□ -0.55
CLN3-248ENST00000636355 HBP1O60381 514 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 SNAI1O95863 264 aaPredicted RBP11.62□□□□□ -0.55
CLN3-248ENST00000636355 IGHA2P01877 340 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 NR3C1P04150 777 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 XRCC5P13010 732 aaKnown RBP11.62□□□□□ -0.55
CLN3-248ENST00000636355 HOXD13P35453 343 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 NAMPTP43490 491 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 NPEPPSP55786 919 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 CRHR2Q13324 411 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 ACVR2BQ13705 512 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 HSDL1Q3SXM5 330 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 CCDC40Q4G0X9 1142 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 HSP90AA4PQ58FG1 418 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 MIIPQ5JXC2 388 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 FAM102BQ5T8I3 360 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 EEPD1Q7L9B9 569 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 HAUS6Q7Z4H7 955 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 PPFIBP1Q86W92 1011 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 NELFCDQ8IXH7 590 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 TMEM161BQ8NDZ6 487 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 CEP89Q96ST8 783 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 NOC4LQ9BVI4 516 aaKnown RBP11.62□□□□□ -0.55
CLN3-248ENST00000636355 KCNF1Q9H3M0 494 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 XPNPEP1Q9NQW7 623 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 KCND1Q9NSA2 647 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 TAB2Q9NYJ8 693 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 ARHGAP28Q9P2N2 729 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 Q9Y3F1 56 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 KAT6AQ92794 2004 aa11.62□□□□□ -0.55
CLN3-248ENST00000636355 A0A1W2PQJ5 194 aa11.61□□□□□ -0.55
CLN3-248ENST00000636355 GTPBP10A4D1E9 387 aaKnown RBP11.61□□□□□ -0.55
CLN3-248ENST00000636355 TNPO2O14787 897 aaKnown RBP11.61□□□□□ -0.55
CLN3-248ENST00000636355 TGFB1I1O43294 461 aa11.61□□□□□ -0.55
CLN3-248ENST00000636355 PPFIA4O75335 1185 aa11.61□□□□□ -0.55
CLN3-248ENST00000636355 MAFO75444 373 aaPredicted RBP11.61□□□□□ -0.55
CLN3-248ENST00000636355 PRPF6O94906 941 aaKnown RBP11.61□□□□□ -0.55
CLN3-248ENST00000636355 ATP4AP20648 1035 aa11.61□□□□□ -0.55
CLN3-248ENST00000636355 FECHP22830 423 aa11.61□□□□□ -0.55
CLN3-248ENST00000636355 NMT1P30419 496 aaKnown RBP11.61□□□□□ -0.55
CLN3-248ENST00000636355 NPTX2P47972 431 aa11.61□□□□□ -0.55
CLN3-248ENST00000636355 FCGRTP55899 365 aa11.61□□□□□ -0.55
CLN3-248ENST00000636355 UBXN1Q04323 297 aa11.61□□□□□ -0.55
CLN3-248ENST00000636355 ADAM9Q13443 819 aa11.61□□□□□ -0.55
CLN3-248ENST00000636355 MXD4Q14582 209 aaPredicted RBP11.61□□□□□ -0.55
CLN3-248ENST00000636355 ARID5BQ14865 1188 aa11.61□□□□□ -0.55
CLN3-248ENST00000636355 MTERF2Q49AM1 385 aa11.61□□□□□ -0.55
CLN3-248ENST00000636355 VWA3BQ502W6 1294 aa11.61□□□□□ -0.55
CLN3-248ENST00000636355 BRDTQ58F21 947 aaPredicted RBP11.61□□□□□ -0.55
CLN3-248ENST00000636355 GLG1Q92896 1179 aa11.61□□□□□ -0.55
CLN3-248ENST00000636355 EDEM3Q9BZQ6 932 aa11.61□□□□□ -0.55
CLN3-248ENST00000636355 NDST4Q9H3R1 872 aa11.61□□□□□ -0.55
CLN3-248ENST00000636355 AGPAT3Q9NRZ7 376 aa11.61□□□□□ -0.55
CLN3-248ENST00000636355 DMAC2Q9NW81 257 aa11.61□□□□□ -0.55
CLN3-248ENST00000636355 ARMCX3Q9UH62 379 aaPredicted RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms