RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 GPR19Q15760 415 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 FXNQ16595 210 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 PLEKHG4Q58EX7 1191 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 FIGNQ5HY92 759 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 C1QL3Q5VWW1 255 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 KRT40Q6A162 431 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 KLHDC10Q6PID8 442 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 METTL16Q86W50 562 aaKnown RBP1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 NT5DC4Q86YG4 428 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 CMTR2Q8IYT2 770 aaKnown RBP1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 BOLLQ8N9W6 283 aaKnown RBP1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 ASB15Q8WXK1 588 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 ERCC4Q92889 916 aaPredicted RBP1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 ARL8AQ96BM9 186 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 SLC7A6OSQ96CW6 309 aaPredicted RBP1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 SEC16BQ96JE7 1060 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 ZFYVE21Q9BQ24 234 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 TCF25Q9BQ70 676 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 SPATA5L1Q9BVQ7 753 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 SLC6A15Q9H2J7 730 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 ZNF768Q9H5H4 540 aaKnown RBP1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 IL23AQ9NPF7 189 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 PPP1R1BQ9UD71 204 aaPredicted RBP1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 SFMBT1Q9UHJ3 866 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 EIF2B4Q9UI10 523 aaKnown RBP1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 STRIP2Q9ULQ0 834 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 TRAF6Q9Y4K3 522 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 HS3ST4Q9Y661 456 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 C2orf78A6NCI8 922 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 UNCXA6NJT0 531 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 GRXCR1A8MXD5 290 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 MFAP3LO75121 409 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 H2AFYO75367 372 aaKnown RBP1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 RECQL4O94761 1208 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 RECKO95980 971 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 PYGMP11217 842 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 PABPC1P11940 636 aaKnown RBP1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 GYPEP15421 78 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 LAG3P18627 525 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 GNAT2P19087 354 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 CTGFP29279 349 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 ZEB1P37275 1124 aaPredicted RBP1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 ABCG1P45844 678 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 DNM2P50570 870 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 PTTG1IPP53801 180 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 HERVK_113P62684 666 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 MAP3K12Q12852 859 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 FAM214AQ32MH5 1076 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 TM4SF20Q53R12 229 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 TNNI3KQ59H18 835 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 YOD1Q5VVQ6 348 aaPredicted RBP1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 STYK1Q6J9G0 422 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 NSMFQ6X4W1 530 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 MICALCLQ6ZW33 695 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 MTDHQ86UE4 582 aaKnown RBP1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 CXorf67Q86X51 503 aaPredicted RBP1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 LCORLQ8N3X6 602 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 CISD2Q8N5K1 135 aaKnown RBP1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 SMG7Q92540 1137 aaKnown RBP1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 CAVIN3Q969G5 261 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 OSBP2Q969R2 916 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 FBXW5Q969U6 566 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 GBP4Q96PP9 640 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 AARSD1Q9BTE6 412 aaKnown RBP1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 SLC29A3Q9BZD2 475 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 WDR11Q9BZH6 1224 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 SERHL2Q9H4I8 314 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 CCSER2Q9H7U1 834 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 CAPN10Q9HC96 672 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 ARHGEF4Q9NR80 690 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 DENND2AQ9ULE3 1009 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 CBLCQ9ULV8 474 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 INPP5FQ9Y2H2 1132 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 FRMD4BQ9Y2L6 1034 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 INSL6Q9Y581 213 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 CC2D2AQ9P2K1 1620 aa1.75□□□□□ -2.13
SMARCB1-209ENST00000635578 COL4A3Q01955 1670 aa1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 RASSF10A6NK89 507 aa1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 SCDO00767 359 aa1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 PPFIA4O75335 1185 aa1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 STC2O76061 302 aa1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 IPO13O94829 963 aaKnown RBP1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 TOX4O94842 621 aa1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 C1RP00736 705 aa1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 SSBP05455 408 aaKnown RBP eCLIP1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 APEX1P27695 318 aaKnown RBP1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 CXCR5P32302 372 aa1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 SESN2P58004 480 aaPredicted RBP1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 FAM189BP81408 668 aa1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 GNL2Q13823 731 aaKnown RBP1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 CRY1Q16526 586 aa1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 GPR162Q16538 588 aa1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 ERCC6LQ2NKX8 1250 aa1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 LCE1AQ5T7P2 110 aa1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 FSTL4Q6MZW2 842 aa1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 MFSD5Q6N075 450 aa1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 VPS37DQ86XT2 251 aa1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 BCL6BQ8N143 479 aaPredicted RBP1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 ZNF366Q8N895 744 aa1.74□□□□□ -2.13
SMARCB1-209ENST00000635578 MDGA1Q8NFP4 955 aa1.74□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms