RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 IQCEQ6IPM2 695 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 BORCS6Q96GS4 357 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 OSBPL9Q96SU4 736 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 PDCD2LQ9BRP1 358 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 CBWD1Q9BRT8 395 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 TLR10Q9BXR5 811 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 MTFR1LQ9H019 292 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 AIPL1Q9NZN9 384 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 TCEAL9Q9UHQ7 104 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 RPTORQ8N122 1335 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 QARSP47897 775 aaKnown RBP11.61□□□□□ -0.55
CUX1-221ENST00000622516 ZNF131P52739 623 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 SLC7A5Q01650 507 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 ZNF280CQ8ND82 737 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 NOX5Q96PH1 765 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 ALS2CR12Q96Q35 445 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 PXMP2Q9NR77 195 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 PICK1Q9NRD5 415 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 RAB21Q9UL25 225 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 GOLGA8IPA6NC78 632 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 GOLGA8JA6NMD2 632 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 SLC16A4O15374 487 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 PEX3P56589 373 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 SMC1AQ14683 1233 aaKnown RBP11.61□□□□□ -0.55
CUX1-221ENST00000622516 BRD3Q15059 726 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 ARHGAP44Q17R89 818 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 METTL14Q9HCE5 456 aaKnown RBP11.61□□□□□ -0.55
CUX1-221ENST00000622516 FRMD4BQ9Y2L6 1034 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 RBBP6Q7Z6E9 1792 aaKnown RBP11.6□□□□□ -0.55
CUX1-221ENST00000622516 FZD9O00144 591 aa11.6□□□□□ -0.55
CUX1-221ENST00000622516 EIF3DO15371 548 aaKnown RBP eCLIP11.6□□□□□ -0.55
CUX1-221ENST00000622516 N4BP1O75113 896 aaKnown RBP11.6□□□□□ -0.55
CUX1-221ENST00000622516 FMO5P49326 533 aa11.6□□□□□ -0.55
CUX1-221ENST00000622516 USP14P54578 494 aa11.6□□□□□ -0.55
CUX1-221ENST00000622516 XKR9Q5GH70 373 aa11.6□□□□□ -0.55
CUX1-221ENST00000622516 FAM102BQ5T8I3 360 aa11.6□□□□□ -0.55
CUX1-221ENST00000622516 SCYL3Q8IZE3 742 aa11.6□□□□□ -0.55
CUX1-221ENST00000622516 SYN2Q92777 582 aaPredicted RBP11.6□□□□□ -0.55
CUX1-221ENST00000622516 NUCKS1Q9H1E3 243 aaKnown RBP11.6□□□□□ -0.55
CUX1-221ENST00000622516 GGA3Q9NZ52 723 aa11.6□□□□□ -0.55
CUX1-221ENST00000622516 ANO9A1A5B4 782 aa11.6□□□□□ -0.55
CUX1-221ENST00000622516 PJA2O43164 708 aa11.6□□□□□ -0.55
CUX1-221ENST00000622516 MYBL2P10244 700 aa11.6□□□□□ -0.55
CUX1-221ENST00000622516 OAS2P29728 719 aaKnown RBP11.6□□□□□ -0.55
CUX1-221ENST00000622516 NOP2P46087 812 aaKnown RBP11.6□□□□□ -0.55
CUX1-221ENST00000622516 LRRC1Q9BTT6 524 aa11.6□□□□□ -0.55
CUX1-221ENST00000622516 PDE11AQ9HCR9 933 aa11.6□□□□□ -0.55
CUX1-221ENST00000622516 ODF2LQ9ULJ1 636 aa11.6□□□□□ -0.55
CUX1-221ENST00000622516 USP20Q9Y2K6 914 aa11.6□□□□□ -0.55
CUX1-221ENST00000622516 CCDC169A6NNP5 214 aa11.59□□□□□ -0.55
CUX1-221ENST00000622516 RBAK-RBAKDNI3L0D1 243 aa11.59□□□□□ -0.55
CUX1-221ENST00000622516 SLC16A3O15427 465 aaKnown RBP11.59□□□□□ -0.55
CUX1-221ENST00000622516 PPP1R12BO60237 982 aaPredicted RBP11.59□□□□□ -0.55
CUX1-221ENST00000622516 BCRP11274 1271 aa11.59□□□□□ -0.55
CUX1-221ENST00000622516 GUCY2CP25092 1073 aa11.59□□□□□ -0.55
CUX1-221ENST00000622516 RPS12P25398 132 aaKnown RBP11.59□□□□□ -0.55
CUX1-221ENST00000622516 HIRAP54198 1017 aaPredicted RBP11.59□□□□□ -0.55
CUX1-221ENST00000622516 TMEM132BQ14DG7 1078 aa11.59□□□□□ -0.55
CUX1-221ENST00000622516 FAM84AQ96KN4 292 aa11.59□□□□□ -0.55
CUX1-221ENST00000622516 PLCB1Q9NQ66 1216 aa11.59□□□□□ -0.55
CUX1-221ENST00000622516 POLR2AP24928 1970 aaKnown RBP11.59□□□□□ -0.55
CUX1-221ENST00000622516 H3BQF6 201 aa11.59□□□□□ -0.55
CUX1-221ENST00000622516 PHACTR2O75167 634 aa11.59□□□□□ -0.55
CUX1-221ENST00000622516 NR3C2P08235 984 aa11.59□□□□□ -0.55
CUX1-221ENST00000622516 GCLMP48507 274 aa11.59□□□□□ -0.55
CUX1-221ENST00000622516 FSTL1Q12841 308 aa11.59□□□□□ -0.55
CUX1-221ENST00000622516 TERF2Q15554 542 aa11.59□□□□□ -0.55
CUX1-221ENST00000622516 CCDC181Q5TID7 509 aa11.59□□□□□ -0.55
CUX1-221ENST00000622516 ALKBH5Q6P6C2 394 aaKnown RBP11.59□□□□□ -0.55
CUX1-221ENST00000622516 LARSQ9P2J5 1176 aaKnown RBP11.59□□□□□ -0.55
CUX1-221ENST00000622516 DNAJC12Q9UKB3 198 aa11.59□□□□□ -0.55
CUX1-221ENST00000622516 L1RE1Q9UN81 338 aa11.59□□□□□ -0.55
CUX1-221ENST00000622516 DRAP1Q14919 205 aaPredicted RBP11.58□□□□□ -0.55
CUX1-221ENST00000622516 NAB2Q15742 525 aa11.58□□□□□ -0.55
CUX1-221ENST00000622516 ANO5Q75V66 913 aa11.58□□□□□ -0.55
CUX1-221ENST00000622516 HAUS6Q7Z4H7 955 aa11.58□□□□□ -0.55
CUX1-221ENST00000622516 SPATA4Q8NEY3 305 aa11.58□□□□□ -0.55
CUX1-221ENST00000622516 SEPT11Q9NVA2 429 aaKnown RBP11.58□□□□□ -0.55
CUX1-221ENST00000622516 DMGDHQ9UI17 866 aaKnown RBP11.58□□□□□ -0.55
CUX1-221ENST00000622516 NAGPAQ9UK23 515 aa11.58□□□□□ -0.55
CUX1-221ENST00000622516 LRRIQ3A6PVS8 624 aaPredicted RBP11.58□□□□□ -0.56
CUX1-221ENST00000622516 EVI5O60447 810 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 RGS20O76081 388 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 TNNT3P45378 269 aaPredicted RBP11.58□□□□□ -0.56
CUX1-221ENST00000622516 CKAP4Q07065 602 aaKnown RBP11.58□□□□□ -0.56
CUX1-221ENST00000622516 DCAF15Q66K64 600 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 ZNF771Q7L3S4 317 aaPredicted RBP11.58□□□□□ -0.56
CUX1-221ENST00000622516 GLYCTKQ8IVS8 523 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 PROCA1Q8NCQ7 364 aaPredicted RBP11.58□□□□□ -0.56
CUX1-221ENST00000622516 U2AF1L4Q8WU68 220 aaKnown RBP11.58□□□□□ -0.56
CUX1-221ENST00000622516 SAAL1Q96ER3 474 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 TBC1D22BQ9NU19 505 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 GABBR1Q9UBS5 961 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 SEL1LQ9UBV2 794 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 ZNF214Q9UL59 606 aaPredicted RBP11.58□□□□□ -0.56
CUX1-221ENST00000622516 POTEB2H3BUK9 544 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 ERLIN1O75477 346 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 PPP1R37O75864 691 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 ABCB4P21439 1286 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 BFSP1Q12934 665 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms