RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 CSPG5O95196 566 aa11.54□□□□□ -0.56
VPS11-208ENST00000621676 KCNA2P16389 499 aa11.54□□□□□ -0.56
VPS11-208ENST00000621676 TNNI1P19237 187 aa11.54□□□□□ -0.56
VPS11-208ENST00000621676 NPTX2P47972 431 aa11.54□□□□□ -0.56
VPS11-208ENST00000621676 CBWD6Q4V339 395 aa11.54□□□□□ -0.56
VPS11-208ENST00000621676 CBWD3Q5JTY5 395 aa11.54□□□□□ -0.56
VPS11-208ENST00000621676 CBWD5Q5RIA9 395 aa11.54□□□□□ -0.56
VPS11-208ENST00000621676 CCDC122Q5T0U0 273 aa11.54□□□□□ -0.56
VPS11-208ENST00000621676 EYSQ5T1H1 3165 aa11.54□□□□□ -0.56
VPS11-208ENST00000621676 ADAT2Q7Z6V5 191 aaKnown RBP11.54□□□□□ -0.56
VPS11-208ENST00000621676 LACRTQ9GZZ8 138 aa11.54□□□□□ -0.56
VPS11-208ENST00000621676 EHD2Q9NZN4 543 aa11.54□□□□□ -0.56
VPS11-208ENST00000621676 ADGRA3Q8IWK6 1321 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 PVALEFA0A1B0GWK0 134 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 EIF4A3P38919 411 aaKnown RBP11.53□□□□□ -0.56
VPS11-208ENST00000621676 ZNF200P98182 395 aaPredicted RBP11.53□□□□□ -0.56
VPS11-208ENST00000621676 SPOPLQ6IQ16 392 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 LRRC55Q6ZSA7 311 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 ZNF720Q7Z2F6 126 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 RGS22Q8NE09 1264 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 CUEDC2Q9H467 287 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 GCNT4Q9P109 453 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 AJAP1Q9UKB5 411 aaPredicted RBP11.53□□□□□ -0.56
VPS11-208ENST00000621676 FHOD1Q9Y613 1164 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 MAST2Q6P0Q8 1798 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 A0A0G2JLL6 359 aaPredicted RBP11.53□□□□□ -0.56
VPS11-208ENST00000621676 RCCD1A6NED2 376 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 RASSF10A6NK89 507 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 SPDYE4A6NLX3 237 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 TMEM110-MUSTN1A8MSY1 372 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 IPO7O95373 1038 aaKnown RBP11.53□□□□□ -0.56
VPS11-208ENST00000621676 ATP4AP20648 1035 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 NOP2P46087 812 aaKnown RBP11.53□□□□□ -0.56
VPS11-208ENST00000621676 SETQ01105 290 aaPredicted RBP11.53□□□□□ -0.56
VPS11-208ENST00000621676 PPP2R5CQ13362 524 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 TEX35Q5T0J7 233 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 ARMCX2Q7L311 632 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 PRRT2Q7Z6L0 340 aaPredicted RBP11.53□□□□□ -0.56
VPS11-208ENST00000621676 OR8K1Q8NGG5 319 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 TBC1D22BQ9NU19 505 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 AKT3Q9Y243 479 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 FRMD4BQ9Y2L6 1034 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 PRRC2BQ5JSZ5 2229 aaKnown RBP11.53□□□□□ -0.56
VPS11-208ENST00000621676 FANCGO15287 622 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 TRPA1O75762 1119 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 EPB41P11171 864 aaKnown RBP11.53□□□□□ -0.56
VPS11-208ENST00000621676 DMP1Q13316 513 aaPredicted RBP11.53□□□□□ -0.56
VPS11-208ENST00000621676 GPAT2Q6NUI2 795 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 SLC7A3Q8WY07 619 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 DHX38Q92620 1227 aaKnown RBP11.53□□□□□ -0.56
VPS11-208ENST00000621676 CARD6Q9BX69 1037 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 PACSIN1Q9BY11 444 aa11.53□□□□□ -0.56
VPS11-208ENST00000621676 B4GALT5O43286 388 aa11.52□□□□□ -0.56
VPS11-208ENST00000621676 NCK2O43639 380 aa11.52□□□□□ -0.56
VPS11-208ENST00000621676 PSAPP07602 524 aa11.52□□□□□ -0.56
VPS11-208ENST00000621676 KRT19P08727 400 aa11.52□□□□□ -0.56
VPS11-208ENST00000621676 MMP14P50281 582 aa11.52□□□□□ -0.56
VPS11-208ENST00000621676 DNM2P50570 870 aa11.52□□□□□ -0.56
VPS11-208ENST00000621676 KCNMA1Q12791 1236 aa11.52□□□□□ -0.56
VPS11-208ENST00000621676 SCARA5Q6ZMJ2 495 aa11.52□□□□□ -0.56
VPS11-208ENST00000621676 RNF169Q8NCN4 708 aa11.52□□□□□ -0.56
VPS11-208ENST00000621676 DEPTORQ8TB45 409 aa11.52□□□□□ -0.56
VPS11-208ENST00000621676 NAP1L4Q99733 375 aaKnown RBP11.52□□□□□ -0.56
VPS11-208ENST00000621676 PDE11AQ9HCR9 933 aa11.52□□□□□ -0.56
VPS11-208ENST00000621676 EIF3JO75822 258 aaKnown RBP11.52□□□□□ -0.57
VPS11-208ENST00000621676 CNMDO75829 334 aa11.52□□□□□ -0.57
VPS11-208ENST00000621676 PGK1P00558 417 aa11.52□□□□□ -0.57
VPS11-208ENST00000621676 EXOC3L4Q17RC7 722 aa11.52□□□□□ -0.57
VPS11-208ENST00000621676 ERCC6LQ2NKX8 1250 aa11.52□□□□□ -0.57
VPS11-208ENST00000621676 SLC35F6Q8N357 371 aa11.52□□□□□ -0.57
VPS11-208ENST00000621676 PRPF31Q8WWY3 499 aaKnown RBP11.52□□□□□ -0.57
VPS11-208ENST00000621676 RIT2Q99578 217 aa11.52□□□□□ -0.57
VPS11-208ENST00000621676 KCTD10Q9H3F6 313 aa11.52□□□□□ -0.57
VPS11-208ENST00000621676 NHEJ1Q9H9Q4 299 aaPredicted RBP11.52□□□□□ -0.57
VPS11-208ENST00000621676 SETD4Q9NVD3 440 aa11.52□□□□□ -0.57
VPS11-208ENST00000621676 FBXO40Q9UH90 709 aa11.52□□□□□ -0.57
VPS11-208ENST00000621676 LIMA1Q9UHB6 759 aaKnown RBP11.52□□□□□ -0.57
VPS11-208ENST00000621676 HES2Q9Y543 173 aa11.52□□□□□ -0.57
VPS11-208ENST00000621676 EPN1Q9Y6I3 576 aaPredicted RBP11.52□□□□□ -0.57
VPS11-208ENST00000621676 EMSYQ7Z589 1322 aa11.52□□□□□ -0.57
VPS11-208ENST00000621676 TBX3O15119 743 aa11.52□□□□□ -0.57
VPS11-208ENST00000621676 HS1BP3Q53T59 392 aa11.52□□□□□ -0.57
VPS11-208ENST00000621676 FASTKD5Q7L8L6 764 aaKnown RBP11.52□□□□□ -0.57
VPS11-208ENST00000621676 INPP4AQ96PE3 977 aaPredicted RBP11.52□□□□□ -0.57
VPS11-208ENST00000621676 CYP26B1Q9NR63 512 aa11.52□□□□□ -0.57
VPS11-208ENST00000621676 AGPAT3Q9NRZ7 376 aa11.52□□□□□ -0.57
VPS11-208ENST00000621676 PCDHA2Q9Y5H9 948 aa11.52□□□□□ -0.57
VPS11-208ENST00000621676 K7ERI5 159 aa11.51□□□□□ -0.57
VPS11-208ENST00000621676 ZNF185O15231 689 aa11.51□□□□□ -0.57
VPS11-208ENST00000621676 CTSHP09668 335 aa11.51□□□□□ -0.57
VPS11-208ENST00000621676 ELNP15502 786 aa11.51□□□□□ -0.57
VPS11-208ENST00000621676 CD58P19256 250 aa11.51□□□□□ -0.57
VPS11-208ENST00000621676 NT5C2P49902 561 aa11.51□□□□□ -0.57
VPS11-208ENST00000621676 LIG4P49917 911 aa11.51□□□□□ -0.57
VPS11-208ENST00000621676 GUCY2FP51841 1108 aa11.51□□□□□ -0.57
VPS11-208ENST00000621676 TRIM32Q13049 653 aa11.51□□□□□ -0.57
VPS11-208ENST00000621676 MAPK7Q13164 816 aa11.51□□□□□ -0.57
VPS11-208ENST00000621676 PLCB4Q15147 1175 aa11.51□□□□□ -0.57
VPS11-208ENST00000621676 MAN2A1Q16706 1144 aa11.51□□□□□ -0.57
VPS11-208ENST00000621676 KIZQ2M2Z5 673 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms