RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ARL2BPQ9Y2Y0 163 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 NFKBIEO00221 500 aa11.71□□□□□ -0.53
UPF3A-212ENST00000619079 GNA14O95837 355 aa11.71□□□□□ -0.53
UPF3A-212ENST00000619079 FGFR2P21802 821 aa11.71□□□□□ -0.53
UPF3A-212ENST00000619079 POLR2FP61218 127 aaKnown RBP11.71□□□□□ -0.53
UPF3A-212ENST00000619079 PSMD2Q13200 908 aa11.71□□□□□ -0.53
UPF3A-212ENST00000619079 SV2BQ7L1I2 683 aa11.71□□□□□ -0.53
UPF3A-212ENST00000619079 PEX26Q7Z412 305 aa11.71□□□□□ -0.53
UPF3A-212ENST00000619079 SPICE1Q8N0Z3 855 aa11.71□□□□□ -0.53
UPF3A-212ENST00000619079 DAGLBQ8NCG7 672 aa11.71□□□□□ -0.53
UPF3A-212ENST00000619079 PRCCQ92733 491 aaPredicted RBP11.71□□□□□ -0.53
UPF3A-212ENST00000619079 LSM14BQ9BX40 385 aaKnown RBP11.71□□□□□ -0.53
UPF3A-212ENST00000619079 LRRC27Q9C0I9 530 aa11.71□□□□□ -0.53
UPF3A-212ENST00000619079 TMEM60Q9H2L4 133 aa11.71□□□□□ -0.53
UPF3A-212ENST00000619079 STK17AQ9UEE5 414 aa11.71□□□□□ -0.53
UPF3A-212ENST00000619079 COL4A3BPQ9Y5P4 624 aa11.71□□□□□ -0.53
UPF3A-212ENST00000619079 FAM187AA6NFU0 413 aa11.71□□□□□ -0.54
UPF3A-212ENST00000619079 WTIPA6NIX2 430 aaPredicted RBP11.71□□□□□ -0.54
UPF3A-212ENST00000619079 NOL4O94818 638 aa11.71□□□□□ -0.54
UPF3A-212ENST00000619079 GJB6O95452 261 aa11.71□□□□□ -0.54
UPF3A-212ENST00000619079 FGRP09769 529 aa11.71□□□□□ -0.54
UPF3A-212ENST00000619079 OR52Z1P0C646 297 aa11.71□□□□□ -0.54
UPF3A-212ENST00000619079 GNAT1P11488 350 aa11.71□□□□□ -0.54
UPF3A-212ENST00000619079 CDC25CP30307 473 aa11.71□□□□□ -0.54
UPF3A-212ENST00000619079 AOC3Q16853 763 aa11.71□□□□□ -0.54
UPF3A-212ENST00000619079 MTHFD1LQ6UB35 978 aa11.71□□□□□ -0.54
UPF3A-212ENST00000619079 GPIHBP1Q8IV16 184 aa11.71□□□□□ -0.54
UPF3A-212ENST00000619079 LARGE2Q8N3Y3 721 aa11.71□□□□□ -0.54
UPF3A-212ENST00000619079 FAM167BQ9BTA0 163 aa11.71□□□□□ -0.54
UPF3A-212ENST00000619079 DPH5Q9H2P9 285 aa11.71□□□□□ -0.54
UPF3A-212ENST00000619079 STK38LQ9Y2H1 464 aa11.71□□□□□ -0.54
UPF3A-212ENST00000619079 FAM205AQ6ZU69 1335 aa11.71□□□□□ -0.54
UPF3A-212ENST00000619079 A0A0A6YYK5 440 aaPredicted RBP11.7□□□□□ -0.54
UPF3A-212ENST00000619079 CCNB1P14635 433 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 DRG2P55039 364 aaKnown RBP11.7□□□□□ -0.54
UPF3A-212ENST00000619079 FKBP3Q00688 224 aaKnown RBP11.7□□□□□ -0.54
UPF3A-212ENST00000619079 MKRN3Q13064 507 aaKnown RBP11.7□□□□□ -0.54
UPF3A-212ENST00000619079 GNPTABQ3T906 1256 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 SLFN11Q7Z7L1 901 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 LRRC15Q8TF66 581 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 DYDC1Q8WWB3 177 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 PACSIN1Q9BY11 444 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 AZI2Q9H6S1 392 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 GOPCQ9HD26 462 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 RASAL2Q9UJF2 1139 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 M0R2N6 131 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 TULP1O00294 542 aaPredicted RBP11.7□□□□□ -0.54
UPF3A-212ENST00000619079 ATP5HO75947 161 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 ZBTB48P10074 688 aaPredicted RBP11.7□□□□□ -0.54
UPF3A-212ENST00000619079 ATP6V1C1P21283 382 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 ALDH3A1P30838 453 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 PCK1P35558 622 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 NPEPPSP55786 919 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 PTENP60484 403 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 CCDC15Q0P6D6 951 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 DHX34Q14147 1143 aaKnown RBP11.7□□□□□ -0.54
UPF3A-212ENST00000619079 DIXDC1Q155Q3 683 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 CNGA2Q16280 664 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 TSNAXIP1Q2TAA8 658 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 RPUSD2Q8IZ73 545 aaKnown RBP11.7□□□□□ -0.54
UPF3A-212ENST00000619079 MIGA1Q8NAN2 632 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 TPCN2Q8NHX9 752 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 ATP8B4Q8TF62 1192 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 TEKT4Q8WW24 435 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 CEP63Q96MT8 703 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 ERP44Q9BS26 406 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 VCXQ9H320 206 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 TXLNGQ9NUQ3 528 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 RGL1Q9NZL6 768 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 LRP2BPQ9P2M1 347 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 PARP2Q9UGN5 583 aa11.7□□□□□ -0.54
UPF3A-212ENST00000619079 MAGEB6P1A0A0J9YX57 407 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 TLDC2A0PJX2 215 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 DPPA5A6NC42 116 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 SHBGP04278 402 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 DR1Q01658 176 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 POU5F1Q01860 360 aaKnown RBP11.69□□□□□ -0.54
UPF3A-212ENST00000619079 ORC2Q13416 577 aaPredicted RBP11.69□□□□□ -0.54
UPF3A-212ENST00000619079 UBE4AQ14139 1066 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 PARP6Q2NL67 630 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 DUPD1Q68J44 220 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 SPATA21Q7Z572 469 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 DAAM2Q86T65 1068 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 VPS36Q86VN1 386 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 JDP2Q8WYK2 163 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 DTNBP1Q96EV8 351 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 EPB41L4BQ9H329 900 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 RNPEPL1Q9HAU8 725 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 ZDHHC18Q9NUE0 388 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 IRAK4Q9NWZ3 460 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 RNF181Q9P0P0 153 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 MTRF1LQ9UGC7 380 aaKnown RBP11.69□□□□□ -0.54
UPF3A-212ENST00000619079 INTUQ9ULD6 942 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 GPR75-ASB3A0A0A6YYF3 556 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 ITGA4P13612 1032 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 GNAZP19086 355 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 LMNB1P20700 586 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 CALB2P22676 271 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 ATP5DP30049 168 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 IFNAR2P48551 515 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms