RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 ALS2CR12Q96Q35 445 aa13.56□□□□□ -0.24
CIITA-212ENST00000618207 METTL14Q9HCE5 456 aaKnown RBP13.56□□□□□ -0.24
CIITA-212ENST00000618207 DOCK5Q9H7D0 1870 aa13.56□□□□□ -0.24
CIITA-212ENST00000618207 RPTORQ8N122 1335 aa13.56□□□□□ -0.24
CIITA-212ENST00000618207 SSU72P8A0A1W2PR75 194 aa13.56□□□□□ -0.24
CIITA-212ENST00000618207 CLGNO14967 610 aa13.56□□□□□ -0.24
CIITA-212ENST00000618207 HIRAP54198 1017 aaPredicted RBP13.56□□□□□ -0.24
CIITA-212ENST00000618207 USP14P54578 494 aa13.56□□□□□ -0.24
CIITA-212ENST00000618207 MS4A14Q96JA4 679 aa13.56□□□□□ -0.24
CIITA-212ENST00000618207 CBWD1Q9BRT8 395 aa13.56□□□□□ -0.24
CIITA-212ENST00000618207 SEPT11Q9NVA2 429 aaKnown RBP13.56□□□□□ -0.24
CIITA-212ENST00000618207 LARSQ9P2J5 1176 aaKnown RBP13.56□□□□□ -0.24
CIITA-212ENST00000618207 RBBP6Q7Z6E9 1792 aaKnown RBP13.55□□□□□ -0.24
CIITA-212ENST00000618207 PALMO75781 387 aa13.55□□□□□ -0.24
CIITA-212ENST00000618207 NR3C2P08235 984 aa13.55□□□□□ -0.24
CIITA-212ENST00000618207 NOP2P46087 812 aaKnown RBP13.55□□□□□ -0.24
CIITA-212ENST00000618207 TMEM132BQ14DG7 1078 aa13.55□□□□□ -0.24
CIITA-212ENST00000618207 SLC18A3Q16572 532 aa13.55□□□□□ -0.24
CIITA-212ENST00000618207 JRKLQ9Y4A0 524 aa13.55□□□□□ -0.24
CIITA-212ENST00000618207 COL11A1P12107 1806 aaPredicted RBP13.55□□□□□ -0.24
CIITA-212ENST00000618207 EIF3DO15371 548 aaKnown RBP eCLIP13.55□□□□□ -0.24
CIITA-212ENST00000618207 TUBB2AQ13885 445 aa13.55□□□□□ -0.24
CIITA-212ENST00000618207 IQCEQ6IPM2 695 aa13.55□□□□□ -0.24
CIITA-212ENST00000618207 NOX5Q96PH1 765 aa13.55□□□□□ -0.24
CIITA-212ENST00000618207 TUBB2BQ9BVA1 445 aa13.55□□□□□ -0.24
CIITA-212ENST00000618207 EDEM3Q9BZQ6 932 aa13.55□□□□□ -0.24
CIITA-212ENST00000618207 ODF2LQ9ULJ1 636 aa13.55□□□□□ -0.24
CIITA-212ENST00000618207 USP20Q9Y2K6 914 aa13.55□□□□□ -0.24
CIITA-212ENST00000618207 BCRP11274 1271 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 FMO5P49326 533 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 ZNF131P52739 623 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 MAPK8IP2Q13387 824 aaPredicted RBP13.54□□□□□ -0.24
CIITA-212ENST00000618207 CCDC181Q5TID7 509 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 STXBP4Q6ZWJ1 553 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 IRF2BP2Q7Z5L9 587 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 NLRX1Q86UT6 975 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 SNX12Q9UMY4 172 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 KIAA1217Q5T5P2 1943 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 CCDC151A5D8V7 595 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 DDNO94850 711 aaPredicted RBP13.54□□□□□ -0.24
CIITA-212ENST00000618207 LCA5LO95447 670 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 SLC7A5Q01650 507 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 DPY19L2P1Q6NXN4 242 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 FAM84AQ96KN4 292 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 OSBPL9Q96SU4 736 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 FUT8Q9BYC5 575 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 NUCKS1Q9H1E3 243 aaKnown RBP13.54□□□□□ -0.24
CIITA-212ENST00000618207 AS3MTQ9HBK9 375 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 SIX2Q9NPC8 291 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 AIPL1Q9NZN9 384 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 GABBR1Q9UBS5 961 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 GUCY2CP25092 1073 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 GYS2P54840 703 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 ZNF662Q6ZS27 426 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 HAUS6Q7Z4H7 955 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 SEL1LQ9UBV2 794 aa13.54□□□□□ -0.24
CIITA-212ENST00000618207 SLC16A3O15427 465 aaKnown RBP13.53□□□□□ -0.24
CIITA-212ENST00000618207 GCLMP48507 274 aa13.53□□□□□ -0.24
CIITA-212ENST00000618207 FSTL1Q12841 308 aa13.53□□□□□ -0.24
CIITA-212ENST00000618207 SWSAP1Q6NVH7 229 aa13.53□□□□□ -0.24
CIITA-212ENST00000618207 CREG2Q8IUH2 290 aa13.53□□□□□ -0.24
CIITA-212ENST00000618207 U2AF1L4Q8WU68 220 aaKnown RBP13.53□□□□□ -0.24
CIITA-212ENST00000618207 KLRG1Q96E93 195 aa13.53□□□□□ -0.24
CIITA-212ENST00000618207 SAAL1Q96ER3 474 aa13.53□□□□□ -0.24
CIITA-212ENST00000618207 BORCS6Q96GS4 357 aa13.53□□□□□ -0.24
CIITA-212ENST00000618207 TBC1D22BQ9NU19 505 aa13.53□□□□□ -0.24
CIITA-212ENST00000618207 TMOD4Q9NZQ9 345 aa13.53□□□□□ -0.24
CIITA-212ENST00000618207 DNAJC12Q9UKB3 198 aa13.53□□□□□ -0.24
CIITA-212ENST00000618207 ZNF214Q9UL59 606 aaPredicted RBP13.53□□□□□ -0.24
CIITA-212ENST00000618207 ANO9A1A5B4 782 aa13.53□□□□□ -0.24
CIITA-212ENST00000618207 USP8P40818 1118 aa13.53□□□□□ -0.24
CIITA-212ENST00000618207 DRAP1Q14919 205 aaPredicted RBP13.53□□□□□ -0.24
CIITA-212ENST00000618207 ALKBH5Q6P6C2 394 aaKnown RBP13.53□□□□□ -0.24
CIITA-212ENST00000618207 MSANTD4Q8NCY6 345 aa13.53□□□□□ -0.24
CIITA-212ENST00000618207 HDAC7Q8WUI4 952 aa13.53□□□□□ -0.24
CIITA-212ENST00000618207 CCDC127Q96BQ5 260 aa13.53□□□□□ -0.24
CIITA-212ENST00000618207 CEP170P1Q96L14 293 aa13.53□□□□□ -0.24
CIITA-212ENST00000618207 TLR10Q9BXR5 811 aa13.53□□□□□ -0.24
CIITA-212ENST00000618207 GPRC5DQ9NZD1 345 aa13.53□□□□□ -0.24
CIITA-212ENST00000618207 BRCA1P38398 1863 aaKnown RBP13.53□□□□□ -0.24
CIITA-212ENST00000618207 WDR64B1ANS9 1081 aa13.52□□□□□ -0.24
CIITA-212ENST00000618207 EVI5O60447 810 aa13.52□□□□□ -0.24
CIITA-212ENST00000618207 ABCB4P21439 1286 aa13.52□□□□□ -0.24
CIITA-212ENST00000618207 DSG3P32926 999 aa13.52□□□□□ -0.24
CIITA-212ENST00000618207 TNNT3P45378 269 aaPredicted RBP13.52□□□□□ -0.24
CIITA-212ENST00000618207 CNTN2Q02246 1040 aa13.52□□□□□ -0.24
CIITA-212ENST00000618207 BFSP1Q12934 665 aa13.52□□□□□ -0.24
CIITA-212ENST00000618207 BEND6Q5SZJ8 279 aaPredicted RBP13.52□□□□□ -0.24
CIITA-212ENST00000618207 ANO5Q75V66 913 aa13.52□□□□□ -0.24
CIITA-212ENST00000618207 EEPD1Q7L9B9 569 aa13.52□□□□□ -0.24
CIITA-212ENST00000618207 SYN2Q92777 582 aaPredicted RBP13.52□□□□□ -0.24
CIITA-212ENST00000618207 PLCB1Q9NQ66 1216 aa13.52□□□□□ -0.24
CIITA-212ENST00000618207 A1CFQ9NQ94 594 aaKnown RBP13.52□□□□□ -0.24
CIITA-212ENST00000618207 EMSYQ7Z589 1322 aa13.52□□□□□ -0.25
CIITA-212ENST00000618207 CCND2P30279 289 aa13.52□□□□□ -0.25
CIITA-212ENST00000618207 PSMC5P62195 406 aa13.52□□□□□ -0.25
CIITA-212ENST00000618207 MYL7Q01449 175 aa13.52□□□□□ -0.25
CIITA-212ENST00000618207 CKAP4Q07065 602 aaKnown RBP13.52□□□□□ -0.25
CIITA-212ENST00000618207 SMC1AQ14683 1233 aaKnown RBP13.52□□□□□ -0.25
CIITA-212ENST00000618207 BRD3Q15059 726 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms