RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 BYSLQ13895 437 aaKnown RBP13.6□□□□□ -0.23
LIG1-221ENST00000613670 ECM1Q16610 540 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 TMEM132AQ24JP5 1023 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 JAMLQ86YT9 394 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 FMNL3Q8IVF7 1028 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 LINC00116Q8NCU8 138 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 ARHGEF2Q92974 986 aaKnown RBP13.6□□□□□ -0.23
LIG1-221ENST00000613670 ADAM33Q9BZ11 813 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 PCDHGC5Q9Y5F6 944 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 MYH2Q9UKX2 1941 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 ATMINO43313 823 aaPredicted RBP13.59□□□□□ -0.23
LIG1-221ENST00000613670 IFNB1P01574 187 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 DLATP10515 647 aaKnown RBP13.59□□□□□ -0.23
LIG1-221ENST00000613670 CASP5P51878 434 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 ZNF131P52739 623 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 SESN3P58005 492 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 ADCY2Q08462 1091 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 QPCTQ16769 361 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 LONRF1Q17RB8 773 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 NBPF9Q3BBW0 867 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 MEX3CQ5U5Q3 659 aaKnown RBP13.59□□□□□ -0.23
LIG1-221ENST00000613670 CATSPER3Q86XQ3 398 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 C1orf54Q8WWF1 131 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 CALR3Q96L12 384 aaKnown RBP13.59□□□□□ -0.23
LIG1-221ENST00000613670 PPP1R12CQ9BZL4 782 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 ABCB11O95342 1321 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 FSBPO95073 299 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 FGRP09769 529 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 SLURP2P0DP57 97 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 GPSM2P81274 684 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 PRPF38AQ8NAV1 312 aaKnown RBP13.59□□□□□ -0.23
LIG1-221ENST00000613670 TEKT1Q969V4 418 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 ERP44Q9BS26 406 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 YY1AP1Q9H869 796 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 NARFQ9UHQ1 456 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 BCL9O00512 1426 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 DCDC2CA8MYV0 355 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 TCP11X1B4DZS4 312 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 TAL1P17542 331 aaPredicted RBP13.59□□□□□ -0.23
LIG1-221ENST00000613670 SLC35G1Q2M3R5 365 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 EDRF1Q3B7T1 1238 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 HP1BP3Q5SSJ5 553 aaPredicted RBP13.59□□□□□ -0.23
LIG1-221ENST00000613670 AGBL2Q5U5Z8 902 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 SRRM1Q8IYB3 904 aaKnown RBP13.59□□□□□ -0.23
LIG1-221ENST00000613670 CPXCR1Q8N123 301 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 RUNDC3BQ96NL0 473 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 MTMR9Q96QG7 549 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 HEMGNQ9BXL5 484 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 THAP2Q9H0W7 228 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 VPS37BQ9H9H4 285 aa13.59□□□□□ -0.23
LIG1-221ENST00000613670 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.59□□□□□ -0.23
LIG1-221ENST00000613670 CCT8L1PA6NM43 557 aa13.58□□□□□ -0.23
LIG1-221ENST00000613670 OPLAHO14841 1288 aa13.58□□□□□ -0.23
LIG1-221ENST00000613670 HIP1RO75146 1068 aa13.58□□□□□ -0.23
LIG1-221ENST00000613670 ALDH3A1P30838 453 aa13.58□□□□□ -0.23
LIG1-221ENST00000613670 PDE6CP51160 858 aa13.58□□□□□ -0.23
LIG1-221ENST00000613670 FAM196AQ6ZSG2 479 aa13.58□□□□□ -0.23
LIG1-221ENST00000613670 EPS8L3Q8TE67 593 aaKnown RBP13.58□□□□□ -0.23
LIG1-221ENST00000613670 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.58□□□□□ -0.23
LIG1-221ENST00000613670 C18orf8Q96DM3 657 aa13.58□□□□□ -0.23
LIG1-221ENST00000613670 FAM167BQ9BTA0 163 aa13.58□□□□□ -0.23
LIG1-221ENST00000613670 MXD3Q9BW11 206 aa13.58□□□□□ -0.23
LIG1-221ENST00000613670 AIPL1Q9NZN9 384 aa13.58□□□□□ -0.23
LIG1-221ENST00000613670 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.58□□□□□ -0.23
LIG1-221ENST00000613670 CPP00450 1065 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 KCNA1Q09470 495 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 KAZNQ674X7 775 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 RPUSD2Q8IZ73 545 aaKnown RBP13.58□□□□□ -0.24
LIG1-221ENST00000613670 ZKSCAN4Q969J2 545 aaPredicted RBP13.58□□□□□ -0.24
LIG1-221ENST00000613670 INTS2Q9H0H0 1204 aaKnown RBP13.58□□□□□ -0.24
LIG1-221ENST00000613670 HOMER2Q9NSB8 354 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 FGFR1OP2Q9NVK5 253 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 ALG6Q9Y672 507 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 ESYT2A0FGR8 921 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 F8VZ95 297 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 PDXKO00764 312 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 ATF2P15336 505 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 DRP2Q13474 957 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 ZNF449Q6P9G9 518 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 TMC3Q7Z5M5 1100 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 ACTRT1Q8TDG2 376 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 DNAJC19Q96DA6 116 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 DYDC2Q96IM9 177 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 NEUROG2Q9H2A3 272 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 SUCLA2Q9P2R7 463 aaPredicted RBP13.58□□□□□ -0.24
LIG1-221ENST00000613670 PPP1R9AQ9ULJ8 1098 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 FER1L4A9Z1Z3 1794 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 NOL4O94818 638 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 HARSP12081 509 aaKnown RBP13.58□□□□□ -0.24
LIG1-221ENST00000613670 IFI35P80217 286 aaPredicted RBP13.58□□□□□ -0.24
LIG1-221ENST00000613670 SLMAPQ14BN4 828 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 TMED2Q15363 201 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 ARHGEF1Q92888 912 aaKnown RBP13.58□□□□□ -0.24
LIG1-221ENST00000613670 SEMA4AQ9H3S1 761 aa13.58□□□□□ -0.24
LIG1-221ENST00000613670 LARSQ9P2J5 1176 aaKnown RBP13.58□□□□□ -0.24
LIG1-221ENST00000613670 TPX2Q9ULW0 747 aaKnown RBP13.58□□□□□ -0.24
LIG1-221ENST00000613670 SPEF2Q9C093 1822 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 TRAPPC3O43617 180 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 ANKRD20A8PQ5CZ79 823 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 HHATQ5VTY9 493 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms