RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 KCNT2Q6UVM3 1135 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 ERMP1Q7Z2K6 904 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 MICU3Q86XE3 530 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 ZDHHC14Q8IZN3 488 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 METTL13Q8N6R0 699 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 TDRD5Q8NAT2 981 aaKnown RBP7.13□□□□□ -1.27
CUX1-220ENST00000607092 ASIC4Q96FT7 647 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 PHF12Q96QT6 1004 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 JPH2Q9BR39 696 aaPredicted RBP7.13□□□□□ -1.27
CUX1-220ENST00000607092 ANO3Q9BYT9 981 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 TMX1Q9H3N1 280 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 SEMA4AQ9H3S1 761 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 MFSD1Q9H3U5 465 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 CHST12Q9NRB3 414 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 NRBP2Q9NSY0 501 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 BARHL2Q9NY43 387 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 PCDHA10Q9Y5I2 948 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 RBM8AQ9Y5S9 174 aaKnown RBP7.13□□□□□ -1.27
CUX1-220ENST00000607092 TPRP12270 2363 aaKnown RBP7.13□□□□□ -1.27
CUX1-220ENST00000607092 CFAP54Q96N23 3096 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 ESYT2A0FGR8 921 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 SMCO2A6NFE2 343 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 WDR64B1ANS9 1081 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 ZBTB43O43298 467 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 CYP3A4P08684 503 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 HMGB1P09429 215 aaKnown RBP7.12□□□□□ -1.27
CUX1-220ENST00000607092 GSPT1P15170 499 aaKnown RBP7.12□□□□□ -1.27
CUX1-220ENST00000607092 IBSPP21815 317 aaPredicted RBP7.12□□□□□ -1.27
CUX1-220ENST00000607092 EIF4BP23588 611 aaKnown RBP7.12□□□□□ -1.27
CUX1-220ENST00000607092 SFNP31947 248 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 NBL1P41271 181 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 DNM2P50570 870 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 RAB27AP51159 221 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 ITGB3BPQ13352 177 aaPredicted RBP7.12□□□□□ -1.27
CUX1-220ENST00000607092 KCNC3Q14003 757 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 KRT32Q14532 448 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 RTN1Q16799 776 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 KIZQ2M2Z5 673 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 TMEM266Q2M3C6 531 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 FAM102BQ5T8I3 360 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 IER5LQ5T953 404 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 PLPP4Q5VZY2 271 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 SWSAP1Q6NVH7 229 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 CYP26C1Q6V0L0 522 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 OTOP3Q7RTS5 596 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 PLA2G4DQ86XP0 818 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 EXOC8Q8IYI6 725 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 MRPL43Q8N983 215 aaKnown RBP7.12□□□□□ -1.27
CUX1-220ENST00000607092 KREMEN2Q8NCW0 462 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 TRAPPC12Q8WVT3 735 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 SCLT1Q96NL6 688 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 RTP3Q9BQQ7 232 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 ZNF577Q9BSK1 485 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 MYL10Q9BUA6 226 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 TRAIPQ9BWF2 469 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 C22orf23Q9BZE7 217 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 S1PR5Q9H228 398 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 SENP2Q9HC62 589 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 C6orf50Q9HD87 102 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 AKT3Q9Y243 479 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 MAFBQ9Y5Q3 323 aaPredicted RBP7.12□□□□□ -1.27
CUX1-220ENST00000607092 IRAK3Q9Y616 596 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 ACACBO00763 2458 aa7.12□□□□□ -1.27
CUX1-220ENST00000607092 A0A0U1RQF3 1178 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 C22orf31O95567 290 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 ARP10275 920 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 FGFR1P11362 822 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 CD44P16070 742 aaKnown RBP7.11□□□□□ -1.27
CUX1-220ENST00000607092 SFPQP23246 707 aaKnown RBP eCLIP7.11□□□□□ -1.271e-6■■■■□ 22.3
CUX1-220ENST00000607092 JAK3P52333 1124 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 FGD1P98174 961 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 AKAP17AQ02040 695 aaKnown RBP7.11□□□□□ -1.27
CUX1-220ENST00000607092 DSC3Q14574 896 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 WWC2Q6AWC2 1192 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 ASTLQ6HA08 431 aaPredicted RBP7.11□□□□□ -1.27
CUX1-220ENST00000607092 KIAA1841Q6NSI8 718 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 SYCE2Q6PIF2 218 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 APOA5Q6Q788 366 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 GLB1LQ6UWU2 654 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 FAM228AQ86W67 206 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 CCDC60Q8IWA6 550 aaPredicted RBP7.11□□□□□ -1.27
CUX1-220ENST00000607092 REXO1Q8N1G1 1221 aaKnown RBP7.11□□□□□ -1.27
CUX1-220ENST00000607092 CCDC82Q8N4S0 544 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 CCDC148Q8NFR7 591 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 RDM1Q8NG50 284 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 NKD2Q969F2 451 aaPredicted RBP7.11□□□□□ -1.27
CUX1-220ENST00000607092 PGBD4Q96DM1 585 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 BORCS6Q96GS4 357 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 OSMRQ99650 979 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 EMILIN2Q9BXX0 1053 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 GCOM2Q9BZD3 368 aaPredicted RBP7.11□□□□□ -1.27
CUX1-220ENST00000607092 IL25Q9H293 177 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 CWH43Q9H720 699 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 DBR1Q9UK59 544 aaKnown RBP7.11□□□□□ -1.27
CUX1-220ENST00000607092 SSX2IPQ9Y2D8 614 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 TELO2Q9Y4R8 837 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 SAMM50Q9Y512 469 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 HCFC2Q9Y5Z7 792 aa7.11□□□□□ -1.27
CUX1-220ENST00000607092 C2orf71A6NGG8 1288 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 H0Y858 1186 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms