RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 YBX2Q9Y2T7 364 aaKnown RBP21.57■■□□□ 1.04
UPF1-212ENST00000601689 NOC2LQ9Y3T9 749 aaKnown RBP21.57■■□□□ 1.04
UPF1-212ENST00000601689 SZT2Q5T011 3432 aa21.57■■□□□ 1.04
UPF1-212ENST00000601689 STX6O43752 255 aa21.56■■□□□ 1.04
UPF1-212ENST00000601689 RARRES1P49788 294 aa21.56■■□□□ 1.04
UPF1-212ENST00000601689 ATP2C1P98194 919 aaPredicted RBP21.56■■□□□ 1.04
UPF1-212ENST00000601689 TFDP1Q14186 410 aa21.56■■□□□ 1.04
UPF1-212ENST00000601689 TCTN1Q2MV58 587 aa21.56■■□□□ 1.04
UPF1-212ENST00000601689 SNX29Q8TEQ0 813 aa21.56■■□□□ 1.04
UPF1-212ENST00000601689 NLRP4Q96MN2 994 aa21.56■■□□□ 1.04
UPF1-212ENST00000601689 CEP89Q96ST8 783 aa21.56■■□□□ 1.04
UPF1-212ENST00000601689 OSBPL7Q9BZF2 842 aa21.56■■□□□ 1.04
UPF1-212ENST00000601689 TTYH1Q9H313 450 aaPredicted RBP21.56■■□□□ 1.04
UPF1-212ENST00000601689 CDHR5Q9HBB8 845 aa21.56■■□□□ 1.04
UPF1-212ENST00000601689 ERVK-5Q9HDB9 667 aa21.56■■□□□ 1.04
UPF1-212ENST00000601689 DBR1Q9UK59 544 aaKnown RBP21.56■■□□□ 1.04
UPF1-212ENST00000601689 COL4A3BPQ9Y5P4 624 aa21.56■■□□□ 1.04
UPF1-212ENST00000601689 ARID2Q68CP9 1835 aa21.55■■□□□ 1.04
UPF1-212ENST00000601689 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.55■■□□□ 1.04
UPF1-212ENST00000601689 ARHGEF35A5YM69 484 aa21.55■■□□□ 1.04
UPF1-212ENST00000601689 DARSP14868 501 aaKnown RBP21.55■■□□□ 1.04
UPF1-212ENST00000601689 MYOGP15173 224 aa21.55■■□□□ 1.04
UPF1-212ENST00000601689 FERMT3Q86UX7 667 aa21.55■■□□□ 1.04
UPF1-212ENST00000601689 IGSF22Q8N9C0 903 aa21.55■■□□□ 1.04
UPF1-212ENST00000601689 MCPH1Q8NEM0 835 aa21.55■■□□□ 1.04
UPF1-212ENST00000601689 PIGOQ8TEQ8 1089 aa21.55■■□□□ 1.04
UPF1-212ENST00000601689 CDK5RAP3Q96JB5 506 aa21.55■■□□□ 1.04
UPF1-212ENST00000601689 TSPYL2Q9H2G4 693 aaPredicted RBP21.55■■□□□ 1.04
UPF1-212ENST00000601689 ADAMTS10Q9H324 1103 aa21.55■■□□□ 1.04
UPF1-212ENST00000601689 DACT1Q9NYF0 836 aa21.55■■□□□ 1.04
UPF1-212ENST00000601689 STXBP5LQ9Y2K9 1186 aa21.55■■□□□ 1.04
UPF1-212ENST00000601689 PCDHB7Q9Y5E2 793 aa21.55■■□□□ 1.04
UPF1-212ENST00000601689 PTPRSQ13332 1948 aa21.55■■□□□ 1.04
UPF1-212ENST00000601689 A0A087WZ62 844 aa21.54■■□□□ 1.04
UPF1-212ENST00000601689 MED24O75448 989 aa21.54■■□□□ 1.04
UPF1-212ENST00000601689 SPATA31C1P0DKV0 1188 aa21.54■■□□□ 1.04
UPF1-212ENST00000601689 NCBP1Q09161 790 aaKnown RBP21.54■■□□□ 1.04
UPF1-212ENST00000601689 MKRN4PQ13434 485 aaPredicted RBP21.54■■□□□ 1.04
UPF1-212ENST00000601689 FAM228AQ86W67 206 aa21.54■■□□□ 1.04
UPF1-212ENST00000601689 NPAS4Q8IUM7 802 aa21.54■■□□□ 1.04
UPF1-212ENST00000601689 KCTD17Q8N5Z5 321 aa21.54■■□□□ 1.04
UPF1-212ENST00000601689 TMEM40Q8WWA1 233 aa21.54■■□□□ 1.04
UPF1-212ENST00000601689 TMEM143Q96AN5 459 aa21.54■■□□□ 1.04
UPF1-212ENST00000601689 AK8Q96MA6 479 aa21.54■■□□□ 1.04
UPF1-212ENST00000601689 CDX2Q99626 313 aaPredicted RBP21.54■■□□□ 1.04
UPF1-212ENST00000601689 ADAM2Q99965 735 aa21.54■■□□□ 1.04
UPF1-212ENST00000601689 FDXACB1Q9BRP7 624 aaPredicted RBP21.54■■□□□ 1.04
UPF1-212ENST00000601689 NT5C3AQ9H0P0 336 aa21.54■■□□□ 1.04
UPF1-212ENST00000601689 BMP2KQ9NSY1 1161 aaPredicted RBP21.54■■□□□ 1.04
UPF1-212ENST00000601689 DNM3Q9UQ16 869 aa21.54■■□□□ 1.04
UPF1-212ENST00000601689 TTC3P53804 2025 aa21.54■■□□□ 1.04
UPF1-212ENST00000601689 VWA3AA6NCI4 1184 aa21.53■■□□□ 1.04
UPF1-212ENST00000601689 FOSL2P15408 326 aa21.53■■□□□ 1.04
UPF1-212ENST00000601689 DRP2Q13474 957 aa21.53■■□□□ 1.04
UPF1-212ENST00000601689 SLC24A5Q71RS6 500 aa21.53■■□□□ 1.04
UPF1-212ENST00000601689 SRGAP1Q7Z6B7 1085 aa21.53■■□□□ 1.04
UPF1-212ENST00000601689 TMCO2Q7Z6W1 182 aaPredicted RBP21.53■■□□□ 1.04
UPF1-212ENST00000601689 PRPF31Q8WWY3 499 aaKnown RBP21.53■■□□□ 1.04
UPF1-212ENST00000601689 ZNF668Q96K58 619 aaPredicted RBP21.53■■□□□ 1.04
UPF1-212ENST00000601689 SAMD11Q96NU1 681 aa21.53■■□□□ 1.04
UPF1-212ENST00000601689 RGS18Q9NS28 235 aa21.53■■□□□ 1.04
UPF1-212ENST00000601689 KIAA1024Q9UPX6 916 aa21.53■■□□□ 1.04
UPF1-212ENST00000601689 ZBTB39O15060 712 aa21.52■■□□□ 1.04
UPF1-212ENST00000601689 SRGAP2CP0DJJ0 459 aa21.52■■□□□ 1.04
UPF1-212ENST00000601689 PHKA2P46019 1235 aa21.52■■□□□ 1.04
UPF1-212ENST00000601689 SARSP49591 514 aaKnown RBP21.52■■□□□ 1.04
UPF1-212ENST00000601689 HTRA4P83105 476 aaPredicted RBP21.52■■□□□ 1.04
UPF1-212ENST00000601689 GRIN2CQ14957 1233 aa21.52■■□□□ 1.04
UPF1-212ENST00000601689 PCBP1Q15365 356 aaKnown RBP eCLIP21.52■■□□□ 1.04
UPF1-212ENST00000601689 POTEGQ6S5H5 508 aa21.52■■□□□ 1.04
UPF1-212ENST00000601689 ZNF579Q8NAF0 562 aaKnown RBP21.52■■□□□ 1.04
UPF1-212ENST00000601689 TGS1Q96RS0 853 aaKnown RBP21.52■■□□□ 1.04
UPF1-212ENST00000601689 CHST12Q9NRB3 414 aa21.52■■□□□ 1.04
UPF1-212ENST00000601689 RWDD3Q9Y3V2 267 aa21.52■■□□□ 1.04
UPF1-212ENST00000601689 USO1O60763 962 aaKnown RBP21.51■■□□□ 1.03
UPF1-212ENST00000601689 SKIP12755 728 aa21.51■■□□□ 1.03
UPF1-212ENST00000601689 IBSPP21815 317 aaPredicted RBP21.51■■□□□ 1.03
UPF1-212ENST00000601689 LAMTOR4Q0VGL1 99 aa21.51■■□□□ 1.03
UPF1-212ENST00000601689 BECN1Q14457 450 aa21.51■■□□□ 1.03
UPF1-212ENST00000601689 SF3A1Q15459 793 aaKnown RBP21.51■■□□□ 1.03
UPF1-212ENST00000601689 ZRSR1Q15695 479 aaKnown RBP21.51■■□□□ 1.03
UPF1-212ENST00000601689 CATSPER4Q7RTX7 472 aa21.51■■□□□ 1.03
UPF1-212ENST00000601689 FIBCD1Q8N539 461 aa21.51■■□□□ 1.03
UPF1-212ENST00000601689 RNF149Q8NC42 400 aa21.51■■□□□ 1.03
UPF1-212ENST00000601689 RASSF8Q8NHQ8 419 aa21.51■■□□□ 1.03
UPF1-212ENST00000601689 CALML4Q96GE6 196 aa21.51■■□□□ 1.03
UPF1-212ENST00000601689 GUCD1Q96NT3 240 aa21.51■■□□□ 1.03
UPF1-212ENST00000601689 DDX19AQ9NUU7 478 aaKnown RBP21.51■■□□□ 1.03
UPF1-212ENST00000601689 HOXA2O43364 376 aa21.5■■□□□ 1.03
UPF1-212ENST00000601689 SLC26A4O43511 780 aa21.5■■□□□ 1.03
UPF1-212ENST00000601689 GTPBP6O43824 516 aaPredicted RBP21.5■■□□□ 1.03
UPF1-212ENST00000601689 ERLIN2O94905 339 aa21.5■■□□□ 1.03
UPF1-212ENST00000601689 UBA7P41226 1012 aa21.5■■□□□ 1.03
UPF1-212ENST00000601689 TAP1Q03518 808 aa21.5■■□□□ 1.03
UPF1-212ENST00000601689 PADI6Q6TGC4 694 aa21.5■■□□□ 1.03
UPF1-212ENST00000601689 MYLIPQ8WY64 445 aa21.5■■□□□ 1.03
UPF1-212ENST00000601689 ARNTL2Q8WYA1 636 aa21.5■■□□□ 1.03
UPF1-212ENST00000601689 TMX1Q9H3N1 280 aa21.5■■□□□ 1.03
UPF1-212ENST00000601689 PRDM12Q9H4Q4 367 aa21.5■■□□□ 1.03
UPF1-212ENST00000601689 MTMR6Q9Y217 621 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms