RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 NOL7Q9UMY1 257 aaKnown RBP9.84□□□□□ -0.83
TRIM28-214ENST00000600840 KIAA1671Q9BY89 1806 aa9.84□□□□□ -0.83
TRIM28-214ENST00000600840 RALGAPA2Q2PPJ7 1873 aa9.83□□□□□ -0.84
TRIM28-214ENST00000600840 IGKV6D-21A0A0A0MT36 114 aa9.83□□□□□ -0.84
TRIM28-214ENST00000600840 IPO5O00410 1097 aaKnown RBP9.83□□□□□ -0.84
TRIM28-214ENST00000600840 MBTPS2O43462 519 aa9.83□□□□□ -0.84
TRIM28-214ENST00000600840 CSPG5O95196 566 aa9.83□□□□□ -0.84
TRIM28-214ENST00000600840 CD52P31358 61 aa9.83□□□□□ -0.84
TRIM28-214ENST00000600840 ZNF76P36508 570 aa9.83□□□□□ -0.84
TRIM28-214ENST00000600840 PRPHP41219 470 aa9.83□□□□□ -0.84
TRIM28-214ENST00000600840 STAT5BP51692 787 aa9.83□□□□□ -0.84
TRIM28-214ENST00000600840 VCPP55072 806 aaKnown RBP9.83□□□□□ -0.84
TRIM28-214ENST00000600840 SETQ01105 290 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-214ENST00000600840 GRIN1Q05586 938 aa9.83□□□□□ -0.84
TRIM28-214ENST00000600840 GPM6BQ13491 265 aa9.83□□□□□ -0.84
TRIM28-214ENST00000600840 GNL2Q13823 731 aaKnown RBP9.83□□□□□ -0.84
TRIM28-214ENST00000600840 COL19A1Q14993 1142 aa9.83□□□□□ -0.84
TRIM28-214ENST00000600840 AXDND1Q5T1B0 1012 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-214ENST00000600840 ABHD15Q6UXT9 468 aa9.83□□□□□ -0.84
TRIM28-214ENST00000600840 CCDC60Q8IWA6 550 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-214ENST00000600840 TNPO1Q92973 898 aaKnown RBP9.83□□□□□ -0.84
TRIM28-214ENST00000600840 YME1L1Q96TA2 773 aa9.83□□□□□ -0.84
TRIM28-214ENST00000600840 CDHR5Q9HBB8 845 aa9.83□□□□□ -0.84
TRIM28-214ENST00000600840 RC3H2Q9HBD1 1191 aaKnown RBP9.83□□□□□ -0.84
TRIM28-214ENST00000600840 FAM50BQ9Y247 325 aa9.83□□□□□ -0.84
TRIM28-214ENST00000600840 ZBTB42B2RXF5 422 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 H3BNC9 293 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 EML1O00423 815 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 LAD1O00515 517 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 NEMFO60524 1076 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 YEATS4O95619 227 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 GTF2F1P35269 517 aaKnown RBP eCLIP9.82□□□□□ -0.84
TRIM28-214ENST00000600840 FXR2P51116 673 aaKnown RBP eCLIP9.82□□□□□ -0.841e-16■■■□□ 14.9
TRIM28-214ENST00000600840 MRPS6P82932 125 aaKnown RBP9.82□□□□□ -0.84
TRIM28-214ENST00000600840 FOXK2Q01167 660 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 PDIA5Q14554 519 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 SMAD2Q15796 467 aaKnown RBP9.82□□□□□ -0.84
TRIM28-214ENST00000600840 PTPROQ16827 1216 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 ARL6IP4Q66PJ3 421 aaKnown RBP9.82□□□□□ -0.84
TRIM28-214ENST00000600840 TAF2Q6P1X5 1199 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 MTHFD1LQ6UB35 978 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 TRIM67Q6ZTA4 783 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 PLPPR4Q7Z2D5 763 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 BMP8AQ7Z5Y6 402 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 TMEM192Q8IY95 271 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 CRIPAKQ8N1N5 446 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 IGSF22Q8N9C0 903 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 APBB2Q92870 758 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 ZNF689Q96CS4 500 aaPredicted RBP9.82□□□□□ -0.84
TRIM28-214ENST00000600840 ZNF577Q9BSK1 485 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 TMX1Q9H3N1 280 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 NSUN3Q9H649 340 aaKnown RBP9.82□□□□□ -0.84
TRIM28-214ENST00000600840 TBC1D22BQ9NU19 505 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 FBXO2Q9UK22 296 aaPredicted RBP9.82□□□□□ -0.84
TRIM28-214ENST00000600840 TRPC6Q9Y210 931 aa9.82□□□□□ -0.84
TRIM28-214ENST00000600840 MYH9P35579 1960 aaKnown RBP9.82□□□□□ -0.84
TRIM28-214ENST00000600840 RRN3P2A6NIE6 340 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 LINC01565O15544 149 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 PPP6R2O75170 966 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 TBX10O75333 385 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 STBD1O95210 358 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 OR52Z1P0C646 297 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 KLRC1P26715 233 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 GATMP50440 423 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 PPP2R5CQ13362 524 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 CALCRLQ16602 461 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 TMEM266Q2M3C6 531 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 SWSAP1Q6NVH7 229 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 TSHZ1Q6ZSZ6 1077 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 ASCL5Q7RTU5 278 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 TRMT1LQ7Z2T5 733 aaKnown RBP9.81□□□□□ -0.84
TRIM28-214ENST00000600840 SUGP1Q8IWZ8 645 aaKnown RBP9.81□□□□□ -0.84
TRIM28-214ENST00000600840 SLFN12Q8IYM2 578 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 TMEM40Q8WWA1 233 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 ZNF396Q96N95 335 aaPredicted RBP9.81□□□□□ -0.84
TRIM28-214ENST00000600840 PPP1R16BQ96T49 567 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 HSD17B14Q9BPX1 270 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 SDF4Q9BRK5 362 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 MMTAG2Q9BU76 263 aaKnown RBP9.81□□□□□ -0.84
TRIM28-214ENST00000600840 UNC45AQ9H3U1 944 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 AZI2Q9H6S1 392 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 TTC12Q9H892 705 aaPredicted RBP9.81□□□□□ -0.84
TRIM28-214ENST00000600840 PCDHA2Q9Y5H9 948 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 SRPRBQ9Y5M8 271 aaKnown RBP9.81□□□□□ -0.84
TRIM28-214ENST00000600840 TRPV2Q9Y5S1 764 aa9.81□□□□□ -0.84
TRIM28-214ENST00000600840 H0Y858 1186 aa9.8□□□□□ -0.84
TRIM28-214ENST00000600840 GRM6O15303 877 aa9.8□□□□□ -0.84
TRIM28-214ENST00000600840 MGEA5O60502 916 aa9.8□□□□□ -0.84
TRIM28-214ENST00000600840 DGKIO75912 1065 aa9.8□□□□□ -0.84
TRIM28-214ENST00000600840 BMP15O95972 392 aa9.8□□□□□ -0.84
TRIM28-214ENST00000600840 TXKP42681 527 aa9.8□□□□□ -0.84
TRIM28-214ENST00000600840 CEBPZQ03701 1054 aaKnown RBP9.8□□□□□ -0.84
TRIM28-214ENST00000600840 HYAL1Q12794 435 aa9.8□□□□□ -0.84
TRIM28-214ENST00000600840 CAMK1Q14012 370 aa9.8□□□□□ -0.84
TRIM28-214ENST00000600840 CTC1Q2NKJ3 1217 aa9.8□□□□□ -0.84
TRIM28-214ENST00000600840 FOXD4L6Q3SYB3 417 aaPredicted RBP9.8□□□□□ -0.84
TRIM28-214ENST00000600840 ZNF746Q6NUN9 644 aaPredicted RBP9.8□□□□□ -0.84
TRIM28-214ENST00000600840 FOXD4L3Q6VB84 417 aaPredicted RBP9.8□□□□□ -0.84
TRIM28-214ENST00000600840 USP49Q70CQ1 688 aa9.8□□□□□ -0.84
TRIM28-214ENST00000600840 RSPH3Q86UC2 560 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms