RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	LINC01553	A4QN01	128 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	DDX11L8	A8MPP1	907 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	MED24	O75448	989 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	AMH	P03971	560 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	DARS	P14868	501 aa	Known RBP	9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	TMOD1	P28289	359 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	RFC5	P40937	340 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	RARRES1	P49788	294 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	ERVK-21	P61565	698 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	CYP4A11	Q02928	519 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	POU5F1B	Q06416	359 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	CTTN	Q14247	550 aa	Known RBP	9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	ECM1	Q16610	540 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	MTERF2	Q49AM1	385 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	HYI	Q5T013	277 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	LARP1B	Q659C4	914 aa	Known RBP	9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	PLA2G4F	Q68DD2	849 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	NCAPH2	Q6IBW4	605 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	ZNF410	Q86VK4	478 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	IFNLR1	Q8IU57	520 aa	Predicted RBP	9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	EXOC8	Q8IYI6	725 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	METTL13	Q8N6R0	699 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	GAS2L1	Q99501	681 aa	Predicted RBP	9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	OSMR	Q99650	979 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	JPH2	Q9BR39	696 aa	Predicted RBP	9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	SH2D3A	Q9BRG2	576 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	ZBED2	Q9BTP6	218 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	MMTAG2	Q9BU76	263 aa	Known RBP	9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	RGS18	Q9NS28	235 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	SEPT9	Q9UHD8	586 aa	Predicted RBP	9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628	ST3GAL5	Q9UNP4	418 aa		9.83	□□□□□ -0.84
SSBP4-208	ENST00000600628		M0QZ92	97 aa		9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	RPS6KA5	O75582	802 aa		9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	DGKI	O75912	1065 aa		9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	SYT1	P21579	422 aa		9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	ARL2	P36404	184 aa		9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	TEC	P42680	631 aa		9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	PAK2	Q13177	524 aa		9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	TMEM266	Q2M3C6	531 aa		9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	ARL6IP4	Q66PJ3	421 aa	Known RBP	9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	OTUD6A	Q7L8S5	288 aa		9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	TRMT1L	Q7Z2T5	733 aa	Known RBP	9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	BRAP	Q7Z569	592 aa		9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	ZNF598	Q86UK7	904 aa	Known RBP	9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	TPH2	Q8IWU9	490 aa		9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	MYOCD	Q8IZQ8	938 aa		9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	MAP7D2	Q96T17	732 aa		9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	NFKBIZ	Q9BYH8	718 aa		9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	ELAC1	Q9H777	363 aa	Known RBP	9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	RNF19A	Q9NV58	838 aa		9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	NOL7	Q9UMY1	257 aa	Known RBP	9.82	□□□□□ -0.84
SSBP4-208	ENST00000600628	BDP1	A6H8Y1	2624 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	C5orf67	F2Z3F1	127 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	GPR182	O15218	404 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	ASAP2	O43150	1006 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	DGAT1	O75907	488 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	ATF7	P17544	494 aa	Predicted RBP	9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	ATP2B1	P20020	1258 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	PDC	P20941	246 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	HOXA11	P31270	313 aa	Predicted RBP	9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	SARS	P49591	514 aa	Known RBP	9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	DNM2	P50570	870 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	REST	Q13127	1097 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	EMC2	Q15006	297 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	PTPA	Q15257	358 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	ODR4	Q5SWX8	454 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	FAM117B	Q6P1L5	589 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	FERMT3	Q86UX7	667 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	KCTD17	Q8N5Z5	321 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	PIGO	Q8TEQ8	1089 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	PRPF31	Q8WWY3	499 aa	Known RBP	9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	SLC7A3	Q8WY07	619 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	CEP170P1	Q96L14	293 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	MINDY3	Q9H8M7	445 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	CERS4	Q9HA82	394 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	SUGCT	Q9HAC7	445 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	SUCLA2	Q9P2R7	463 aa	Predicted RBP	9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	MTMR6	Q9Y217	621 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	AKT3	Q9Y243	479 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628	COL4A3BP	Q9Y5P4	624 aa		9.81	□□□□□ -0.84
SSBP4-208	ENST00000600628		A0A0U1RQF3	1178 aa		9.8	□□□□□ -0.84
SSBP4-208	ENST00000600628	RFXAP	O00287	272 aa		9.8	□□□□□ -0.84
SSBP4-208	ENST00000600628	ZNF623	O75123	536 aa		9.8	□□□□□ -0.84
SSBP4-208	ENST00000600628	IGFBP4	P22692	258 aa		9.8	□□□□□ -0.84
SSBP4-208	ENST00000600628	PTEN	P60484	403 aa		9.8	□□□□□ -0.84
SSBP4-208	ENST00000600628	LAMTOR4	Q0VGL1	99 aa		9.8	□□□□□ -0.84
SSBP4-208	ENST00000600628	PCBP1	Q15365	356 aa	Known RBP eCLIP	9.8	□□□□□ -0.84	5e-7	■■■□□ 17.8
SSBP4-208	ENST00000600628	AMHR2	Q16671	573 aa		9.8	□□□□□ -0.84
SSBP4-208	ENST00000600628	XKR9	Q5GH70	373 aa		9.8	□□□□□ -0.84
SSBP4-208	ENST00000600628	POTEG	Q6S5H5	508 aa		9.8	□□□□□ -0.84
SSBP4-208	ENST00000600628	SLC24A5	Q71RS6	500 aa		9.8	□□□□□ -0.84
SSBP4-208	ENST00000600628	NPAS4	Q8IUM7	802 aa		9.8	□□□□□ -0.84
SSBP4-208	ENST00000600628	KSR1	Q8IVT5	923 aa		9.8	□□□□□ -0.84
SSBP4-208	ENST00000600628	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	9.8	□□□□□ -0.84
SSBP4-208	ENST00000600628	ARNTL2	Q8WYA1	636 aa		9.8	□□□□□ -0.84
SSBP4-208	ENST00000600628	NACC1	Q96RE7	527 aa		9.8	□□□□□ -0.84
SSBP4-208	ENST00000600628	ADAM2	Q99965	735 aa		9.8	□□□□□ -0.84
SSBP4-208	ENST00000600628	CHST12	Q9NRB3	414 aa		9.8	□□□□□ -0.84
SSBP4-208	ENST00000600628	C1orf112	Q9NSG2	853 aa		9.8	□□□□□ -0.84
SSBP4-208	ENST00000600628	LMCD1	Q9NZU5	365 aa		9.8	□□□□□ -0.84

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