RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 PRPF31Q8WWY3 499 aaKnown RBP16.96■□□□□ 0.31
LIG1-219ENST00000600055 CCDC43Q96MW1 224 aaKnown RBP16.96■□□□□ 0.31
LIG1-219ENST00000600055 SCLT1Q96NL6 688 aa16.96■□□□□ 0.31
LIG1-219ENST00000600055 MTRQ99707 1265 aa16.96■□□□□ 0.31
LIG1-219ENST00000600055 FDXACB1Q9BRP7 624 aaPredicted RBP16.96■□□□□ 0.31
LIG1-219ENST00000600055 ZSCAN16Q9H4T2 348 aaPredicted RBP16.96■□□□□ 0.31
LIG1-219ENST00000600055 DDX19AQ9NUU7 478 aaKnown RBP16.96■□□□□ 0.31
LIG1-219ENST00000600055 MSRAQ9UJ68 235 aa16.96■□□□□ 0.31
LIG1-219ENST00000600055 ST3GAL5Q9UNP4 418 aa16.96■□□□□ 0.31
LIG1-219ENST00000600055 KIAA1024Q9UPX6 916 aa16.96■□□□□ 0.31
LIG1-219ENST00000600055 PCDHA11Q9Y5I1 949 aa16.96■□□□□ 0.31
LIG1-219ENST00000600055 MGEA5O60502 916 aa16.95■□□□□ 0.3
LIG1-219ENST00000600055 USO1O60763 962 aaKnown RBP16.95■□□□□ 0.3
LIG1-219ENST00000600055 ARHGEF15O94989 841 aa16.95■□□□□ 0.3
LIG1-219ENST00000600055 UPP2O95045 317 aa16.95■□□□□ 0.3
LIG1-219ENST00000600055 DARSP14868 501 aaKnown RBP16.95■□□□□ 0.3
LIG1-219ENST00000600055 EIF4BP23588 611 aaKnown RBP16.95■□□□□ 0.3
LIG1-219ENST00000600055 ZNF697Q5TEC3 545 aa16.95■□□□□ 0.3
LIG1-219ENST00000600055 KRT79Q5XKE5 535 aa16.95■□□□□ 0.3
LIG1-219ENST00000600055 EXOC8Q8IYI6 725 aa16.95■□□□□ 0.3
LIG1-219ENST00000600055 NLRP4Q96MN2 994 aa16.95■□□□□ 0.3
LIG1-219ENST00000600055 USP28Q96RU2 1077 aa16.95■□□□□ 0.3
LIG1-219ENST00000600055 SEMA6BQ9H3T3 888 aa16.95■□□□□ 0.3
LIG1-219ENST00000600055 ATP6V0A4Q9HBG4 840 aa16.95■□□□□ 0.3
LIG1-219ENST00000600055 DBR1Q9UK59 544 aaKnown RBP16.95■□□□□ 0.3
LIG1-219ENST00000600055 COL4A3BPQ9Y5P4 624 aa16.95■□□□□ 0.3
LIG1-219ENST00000600055 LCHNA4D1U4 455 aa16.94■□□□□ 0.3
LIG1-219ENST00000600055 E9PMD0 336 aa16.94■□□□□ 0.3
LIG1-219ENST00000600055 TLL1O43897 1013 aa16.94■□□□□ 0.3
LIG1-219ENST00000600055 DGAT1O75907 488 aa16.94■□□□□ 0.3
LIG1-219ENST00000600055 GJB5O95377 273 aa16.94■□□□□ 0.3
LIG1-219ENST00000600055 BMP15O95972 392 aa16.94■□□□□ 0.3
LIG1-219ENST00000600055 CA3P07451 260 aa16.94■□□□□ 0.3
LIG1-219ENST00000600055 ZSCAN22P10073 491 aaPredicted RBP16.94■□□□□ 0.3
LIG1-219ENST00000600055 MUTP22033 750 aa16.94■□□□□ 0.3
LIG1-219ENST00000600055 MARCKSP29966 332 aaPredicted RBP16.94■□□□□ 0.3
LIG1-219ENST00000600055 LAMTOR4Q0VGL1 99 aa16.94■□□□□ 0.3
LIG1-219ENST00000600055 ZRSR1Q15695 479 aaKnown RBP16.94■□□□□ 0.3
LIG1-219ENST00000600055 MAEAQ7L5Y9 396 aa16.94■□□□□ 0.3
LIG1-219ENST00000600055 KCNK18Q7Z418 384 aa16.94■□□□□ 0.3
LIG1-219ENST00000600055 PSPC1Q8WXF1 523 aaKnown RBP16.94■□□□□ 0.3
LIG1-219ENST00000600055 TOP1MTQ969P6 601 aa16.94■□□□□ 0.3
LIG1-219ENST00000600055 ZBED2Q9BTP6 218 aa16.94■□□□□ 0.3
LIG1-219ENST00000600055 GCOM2Q9BZD3 368 aaPredicted RBP16.94■□□□□ 0.3
LIG1-219ENST00000600055 STK24Q9Y6E0 443 aa16.94■□□□□ 0.3
LIG1-219ENST00000600055 SZT2Q5T011 3432 aa16.94■□□□□ 0.3
LIG1-219ENST00000600055 PTPRSQ13332 1948 aa16.94■□□□□ 0.3
LIG1-219ENST00000600055 ARHGEF35A5YM69 484 aa16.93■□□□□ 0.3
LIG1-219ENST00000600055 GPR182O15218 404 aa16.93■□□□□ 0.3
LIG1-219ENST00000600055 GAS2O43903 313 aaKnown RBP16.93■□□□□ 0.3
LIG1-219ENST00000600055 SRGAP2CP0DJJ0 459 aa16.93■□□□□ 0.3
LIG1-219ENST00000600055 IBSPP21815 317 aaPredicted RBP16.93■□□□□ 0.3
LIG1-219ENST00000600055 FOXD4L6Q3SYB3 417 aaPredicted RBP16.93■□□□□ 0.3
LIG1-219ENST00000600055 PADI6Q6TGC4 694 aa16.93■□□□□ 0.3
LIG1-219ENST00000600055 FOXD4L3Q6VB84 417 aaPredicted RBP16.93■□□□□ 0.3
LIG1-219ENST00000600055 ZNF410Q86VK4 478 aa16.93■□□□□ 0.3
LIG1-219ENST00000600055 ZNF710Q8N1W2 664 aa16.93■□□□□ 0.3
LIG1-219ENST00000600055 ASAP3Q8TDY4 903 aa16.93■□□□□ 0.3
LIG1-219ENST00000600055 TCP11Q8WWU5 503 aa16.93■□□□□ 0.3
LIG1-219ENST00000600055 PNMA5Q96PV4 448 aa16.93■□□□□ 0.3
LIG1-219ENST00000600055 PLIN2Q99541 437 aa16.93■□□□□ 0.3
LIG1-219ENST00000600055 FTHL17Q9BXU8 183 aa16.93■□□□□ 0.3
LIG1-219ENST00000600055 TSPYL2Q9H2G4 693 aaPredicted RBP16.93■□□□□ 0.3
LIG1-219ENST00000600055 BHMT2Q9H2M3 363 aa16.93■□□□□ 0.3
LIG1-219ENST00000600055 ZNF576Q9H609 170 aa16.93■□□□□ 0.3
LIG1-219ENST00000600055 GPRC5CQ9NQ84 441 aa16.93■□□□□ 0.3
LIG1-219ENST00000600055 MTMR10Q9NXD2 777 aa16.93■□□□□ 0.3
LIG1-219ENST00000600055 MICAL3Q7RTP6 2002 aa16.92■□□□□ 0.3
LIG1-219ENST00000600055 F13A1P00488 732 aa16.92■□□□□ 0.3
LIG1-219ENST00000600055 CDC42EP1Q00587 391 aa16.92■□□□□ 0.3
LIG1-219ENST00000600055 GRB10Q13322 594 aa16.92■□□□□ 0.3
LIG1-219ENST00000600055 SPECC1Q5M775 1068 aa16.92■□□□□ 0.3
LIG1-219ENST00000600055 CABP7Q86V35 215 aa16.92■□□□□ 0.3
LIG1-219ENST00000600055 RAD9AQ99638 391 aa16.92■□□□□ 0.3
LIG1-219ENST00000600055 ADAM2Q99965 735 aa16.92■□□□□ 0.3
LIG1-219ENST00000600055 POLR3FQ9H1D9 316 aaPredicted RBP16.92■□□□□ 0.3
LIG1-219ENST00000600055 SLC28A3Q9HAS3 691 aa16.92■□□□□ 0.3
LIG1-219ENST00000600055 IFT122Q9HBG6 1241 aa16.92■□□□□ 0.3
LIG1-219ENST00000600055 POLD4Q9HCU8 107 aa16.92■□□□□ 0.3
LIG1-219ENST00000600055 TFIP11Q9UBB9 837 aaKnown RBP16.92■□□□□ 0.3
LIG1-219ENST00000600055 FBXO2Q9UK22 296 aaPredicted RBP16.92■□□□□ 0.3
LIG1-219ENST00000600055 ARID2Q68CP9 1835 aa16.91■□□□□ 0.3
LIG1-219ENST00000600055 EYA4O95677 639 aa16.91■□□□□ 0.3
LIG1-219ENST00000600055 ARL2P36404 184 aa16.91■□□□□ 0.3
LIG1-219ENST00000600055 DSC3Q14574 896 aa16.91■□□□□ 0.3
LIG1-219ENST00000600055 GRIN2CQ14957 1233 aa16.91■□□□□ 0.3
LIG1-219ENST00000600055 ODR4Q5SWX8 454 aa16.91■□□□□ 0.3
LIG1-219ENST00000600055 HYIQ5T013 277 aa16.91■□□□□ 0.3
LIG1-219ENST00000600055 FAM102BQ5T8I3 360 aa16.91■□□□□ 0.3
LIG1-219ENST00000600055 PPP2R2DQ66LE6 453 aa16.91■□□□□ 0.3
LIG1-219ENST00000600055 SPRED2Q7Z698 418 aa16.91■□□□□ 0.3
LIG1-219ENST00000600055 RNF149Q8NC42 400 aa16.91■□□□□ 0.3
LIG1-219ENST00000600055 GUCD1Q96NT3 240 aa16.91■□□□□ 0.3
LIG1-219ENST00000600055 CLIC6Q96NY7 704 aa16.91■□□□□ 0.3
LIG1-219ENST00000600055 CSRNP2Q9H175 543 aa16.91■□□□□ 0.3
LIG1-219ENST00000600055 MINDY3Q9H8M7 445 aa16.91■□□□□ 0.3
LIG1-219ENST00000600055 DNM3Q9UQ16 869 aa16.91■□□□□ 0.3
LIG1-219ENST00000600055 LOXHD1Q8IVV2 1947 aa16.91■□□□□ 0.3
LIG1-219ENST00000600055 GBF1Q92538 1859 aa16.9■□□□□ 0.3
LIG1-219ENST00000600055 TMEM265A0A087WTH1 108 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms