RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 FGF18O76093 207 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 DARSP14868 501 aaKnown RBP11.01□□□□□ -0.65
VRK3-216ENST00000599342 GCFC2P16383 781 aaKnown RBP11.01□□□□□ -0.65
VRK3-216ENST00000599342 DNAJB1P25685 340 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 GTF2F1P35269 517 aaKnown RBP eCLIP11.01□□□□□ -0.65
VRK3-216ENST00000599342 IRS1P35568 1242 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 LTBRP36941 435 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 ANAPC15P60006 121 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 PSMC5P62195 406 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 DLX2Q07687 328 aaPredicted RBP11.01□□□□□ -0.65
VRK3-216ENST00000599342 SMAD4Q13485 552 aaKnown RBP11.01□□□□□ -0.65
VRK3-216ENST00000599342 DSC3Q14574 896 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 TARBP2Q15633 366 aaKnown RBP11.01□□□□□ -0.65
VRK3-216ENST00000599342 NPY5RQ15761 445 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 ADGRD2Q7Z7M1 963 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 NEK8Q86SG6 692 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 ADHFE1Q8IWW8 467 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 LRRC43Q8N309 656 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 COLGALT1Q8NBJ5 622 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 RNF169Q8NCN4 708 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 WASF1Q92558 559 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 KHSRPQ92945 711 aaKnown RBP eCLIP11.01□□□□□ -0.65
VRK3-216ENST00000599342 MBOAT7Q96N66 472 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 POP1Q99575 1024 aaKnown RBP11.01□□□□□ -0.65
VRK3-216ENST00000599342 NAP1L4Q99733 375 aaKnown RBP11.01□□□□□ -0.65
VRK3-216ENST00000599342 LRFN3Q9BTN0 628 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 NIFKQ9BYG3 293 aaKnown RBP11.01□□□□□ -0.65
VRK3-216ENST00000599342 GCOM2Q9BZD3 368 aaPredicted RBP11.01□□□□□ -0.65
VRK3-216ENST00000599342 TMEM117Q9H0C3 514 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 BRMS1Q9HCU9 246 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 TLR9Q9NR96 1032 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 TYW1Q9NV66 732 aaKnown RBP11.01□□□□□ -0.65
VRK3-216ENST00000599342 DACT1Q9NYF0 836 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 CD207Q9UJ71 328 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 TPCN1Q9ULQ1 816 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 HCN4Q9Y3Q4 1203 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 ATG2AQ2TAZ0 1938 aa11□□□□□ -0.65
VRK3-216ENST00000599342 TMEM150BA6NC51 233 aa11□□□□□ -0.65
VRK3-216ENST00000599342 FAM86C2PA6NEL3 165 aa11□□□□□ -0.65
VRK3-216ENST00000599342 DDX11L8A8MPP1 907 aa11□□□□□ -0.65
VRK3-216ENST00000599342 MBTPS2O43462 519 aa11□□□□□ -0.65
VRK3-216ENST00000599342 CCNT1O60563 726 aaKnown RBP11□□□□□ -0.65
VRK3-216ENST00000599342 PFKFB2O60825 505 aa11□□□□□ -0.65
VRK3-216ENST00000599342 EIF5BO60841 1220 aaKnown RBP11□□□□□ -0.65
VRK3-216ENST00000599342 ALADP13716 330 aa11□□□□□ -0.65
VRK3-216ENST00000599342 SFPQP23246 707 aaKnown RBP eCLIP11□□□□□ -0.65
VRK3-216ENST00000599342 NRIP1P48552 1158 aa11□□□□□ -0.65
VRK3-216ENST00000599342 FAM189BP81408 668 aa11□□□□□ -0.65
VRK3-216ENST00000599342 ZP2Q05996 745 aa11□□□□□ -0.65
VRK3-216ENST00000599342 PPP2R5CQ13362 524 aa11□□□□□ -0.65
VRK3-216ENST00000599342 ADAM15Q13444 863 aa11□□□□□ -0.65
VRK3-216ENST00000599342 SMAD2Q15796 467 aaKnown RBP11□□□□□ -0.65
VRK3-216ENST00000599342 PPP4R3AQ6IN85 833 aa11□□□□□ -0.65
VRK3-216ENST00000599342 PDE12Q6L8Q7 609 aaKnown RBP11□□□□□ -0.65
VRK3-216ENST00000599342 B3GNT9Q6UX72 402 aa11□□□□□ -0.65
VRK3-216ENST00000599342 PIK3AP1Q6ZUJ8 805 aa11□□□□□ -0.65
VRK3-216ENST00000599342 RBM23Q86U06 439 aaKnown RBP11□□□□□ -0.65
VRK3-216ENST00000599342 ECHDC2Q86YB7 292 aa11□□□□□ -0.65
VRK3-216ENST00000599342 EFHBQ8N7U6 833 aa11□□□□□ -0.65
VRK3-216ENST00000599342 FAM20AQ96MK3 541 aa11□□□□□ -0.65
VRK3-216ENST00000599342 JPH2Q9BR39 696 aaPredicted RBP11□□□□□ -0.65
VRK3-216ENST00000599342 INO80BQ9C086 356 aaPredicted RBP11□□□□□ -0.65
VRK3-216ENST00000599342 TLE6Q9H808 572 aa11□□□□□ -0.65
VRK3-216ENST00000599342 PPP4R2Q9NY27 417 aa11□□□□□ -0.65
VRK3-216ENST00000599342 ORC3Q9UBD5 711 aaPredicted RBP11□□□□□ -0.65
VRK3-216ENST00000599342 HCSTQ9UBK5 93 aa11□□□□□ -0.65
VRK3-216ENST00000599342 RAPGEFL1Q9UHV5 662 aa11□□□□□ -0.65
VRK3-216ENST00000599342 PUF60Q9UHX1 559 aaKnown RBP11□□□□□ -0.65
VRK3-216ENST00000599342 A0A0U1RQF3 1178 aa10.99□□□□□ -0.65
VRK3-216ENST00000599342 GPR37L1O60883 481 aa10.99□□□□□ -0.65
VRK3-216ENST00000599342 SRGAP2BP0DMP2 458 aa10.99□□□□□ -0.65
VRK3-216ENST00000599342 FGFR4P22455 802 aa10.99□□□□□ -0.65
VRK3-216ENST00000599342 PPM1AP35813 382 aa10.99□□□□□ -0.65
VRK3-216ENST00000599342 QARSP47897 775 aaKnown RBP10.99□□□□□ -0.65
VRK3-216ENST00000599342 AK2P54819 239 aa10.99□□□□□ -0.65
VRK3-216ENST00000599342 DRP2Q13474 957 aa10.99□□□□□ -0.65
VRK3-216ENST00000599342 ZNF410Q86VK4 478 aa10.99□□□□□ -0.65
VRK3-216ENST00000599342 RHPN2Q8IUC4 686 aa10.99□□□□□ -0.65
VRK3-216ENST00000599342 SLC7A3Q8WY07 619 aa10.99□□□□□ -0.65
VRK3-216ENST00000599342 NLRP4Q96MN2 994 aa10.99□□□□□ -0.65
VRK3-216ENST00000599342 ZNF558Q96NG5 402 aa10.99□□□□□ -0.65
VRK3-216ENST00000599342 CASD1Q96PB1 797 aa10.99□□□□□ -0.65
VRK3-216ENST00000599342 CDCA3Q99618 268 aaPredicted RBP10.99□□□□□ -0.65
VRK3-216ENST00000599342 SH2D3AQ9BRG2 576 aa10.99□□□□□ -0.65
VRK3-216ENST00000599342 MRPL9Q9BYD2 267 aaKnown RBP10.99□□□□□ -0.65
VRK3-216ENST00000599342 CWH43Q9H720 699 aa10.99□□□□□ -0.65
VRK3-216ENST00000599342 KCNMB3Q9NPA1 279 aa10.99□□□□□ -0.65
VRK3-216ENST00000599342 ENTPD7Q9NQZ7 604 aa10.99□□□□□ -0.65
VRK3-216ENST00000599342 SUCLA2Q9P2R7 463 aaPredicted RBP10.99□□□□□ -0.65
VRK3-216ENST00000599342 LZTS1Q9Y250 596 aa10.99□□□□□ -0.65
VRK3-216ENST00000599342 FNDC1Q4ZHG4 1894 aaPredicted RBP10.99□□□□□ -0.65
VRK3-216ENST00000599342 A0A087WZ62 844 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 IGKV6-21A0A0C4DH24 114 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 EML1O00423 815 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 TBX3O15119 743 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 DCXO43602 365 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 MAFO75444 373 aaPredicted RBP10.98□□□□□ -0.65
VRK3-216ENST00000599342 CSDE1O75534 798 aaKnown RBP10.98□□□□□ -0.65
VRK3-216ENST00000599342 STBD1O95210 358 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 BAG4O95429 457 aaKnown RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms