RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 PCDHA7Q9UN72 937 aa20.26■□□□□ 0.83
LIG1-216ENST00000598938 TANC1Q9C0D5 1861 aa20.26■□□□□ 0.83
LIG1-216ENST00000598938 ACRP10323 421 aa20.25■□□□□ 0.83
LIG1-216ENST00000598938 ME1P48163 572 aa20.25■□□□□ 0.83
LIG1-216ENST00000598938 CCL23P55773 120 aa20.25■□□□□ 0.83
LIG1-216ENST00000598938 FAM26DQ5JW98 314 aa20.25■□□□□ 0.83
LIG1-216ENST00000598938 LRRC8DQ7L1W4 858 aa20.25■□□□□ 0.83
LIG1-216ENST00000598938 KCNK18Q7Z418 384 aa20.25■□□□□ 0.83
LIG1-216ENST00000598938 RSPH3Q86UC2 560 aa20.25■□□□□ 0.83
LIG1-216ENST00000598938 EXOC8Q8IYI6 725 aa20.25■□□□□ 0.83
LIG1-216ENST00000598938 NME8Q8N427 588 aa20.25■□□□□ 0.83
LIG1-216ENST00000598938 LRRC71Q8N4P6 559 aa20.25■□□□□ 0.83
LIG1-216ENST00000598938 METTL13Q8N6R0 699 aa20.25■□□□□ 0.83
LIG1-216ENST00000598938 CALML4Q96GE6 196 aa20.25■□□□□ 0.83
LIG1-216ENST00000598938 CDK5RAP3Q96JB5 506 aa20.25■□□□□ 0.83
LIG1-216ENST00000598938 CCDC43Q96MW1 224 aaKnown RBP20.25■□□□□ 0.83
LIG1-216ENST00000598938 UHRF1Q96T88 793 aaPredicted RBP20.25■□□□□ 0.83
LIG1-216ENST00000598938 FAM49AQ9H0Q0 323 aaPredicted RBP20.25■□□□□ 0.83
LIG1-216ENST00000598938 DNM3Q9UQ16 869 aa20.25■□□□□ 0.83
LIG1-216ENST00000598938 TRANK1O15050 2925 aa20.24■□□□□ 0.83
LIG1-216ENST00000598938 E9PMD0 336 aa20.24■□□□□ 0.83
LIG1-216ENST00000598938 EYA4O95677 639 aa20.24■□□□□ 0.83
LIG1-216ENST00000598938 IQCF3P0C7M6 154 aa20.24■□□□□ 0.83
LIG1-216ENST00000598938 TMOD1P28289 359 aa20.24■□□□□ 0.83
LIG1-216ENST00000598938 CLCN3P51790 818 aa20.24■□□□□ 0.83
LIG1-216ENST00000598938 POLGP54098 1239 aaPredicted RBP20.24■□□□□ 0.83
LIG1-216ENST00000598938 MGAT3Q09327 533 aa20.24■□□□□ 0.83
LIG1-216ENST00000598938 MKRN4PQ13434 485 aaPredicted RBP20.24■□□□□ 0.83
LIG1-216ENST00000598938 KARSQ15046 597 aaKnown RBP20.24■□□□□ 0.83
LIG1-216ENST00000598938 ZRSR1Q15695 479 aaKnown RBP20.24■□□□□ 0.83
LIG1-216ENST00000598938 SLC7A3Q8WY07 619 aa20.24■□□□□ 0.83
LIG1-216ENST00000598938 CXXC1Q9P0U4 656 aaPredicted RBP20.24■□□□□ 0.83
LIG1-216ENST00000598938 ARHGEF35A5YM69 484 aa20.23■□□□□ 0.83
LIG1-216ENST00000598938 GAS2O43903 313 aaKnown RBP20.23■□□□□ 0.83
LIG1-216ENST00000598938 DGAT1O75907 488 aa20.23■□□□□ 0.83
LIG1-216ENST00000598938 PLCG1P19174 1290 aa20.23■□□□□ 0.83
LIG1-216ENST00000598938 TXLNAP40222 546 aa20.23■□□□□ 0.83
LIG1-216ENST00000598938 MRPS6P82932 125 aaKnown RBP20.23■□□□□ 0.83
LIG1-216ENST00000598938 EMC2Q15006 297 aa20.23■□□□□ 0.83
LIG1-216ENST00000598938 SHC4Q6S5L8 630 aa20.23■□□□□ 0.83
LIG1-216ENST00000598938 RPUSD2Q8IZ73 545 aaKnown RBP20.23■□□□□ 0.83
LIG1-216ENST00000598938 LRRC15Q8TF66 581 aa20.23■□□□□ 0.83
LIG1-216ENST00000598938 SCLYQ96I15 445 aa20.23■□□□□ 0.83
LIG1-216ENST00000598938 PLIN2Q99541 437 aa20.23■□□□□ 0.83
LIG1-216ENST00000598938 BHMT2Q9H2M3 363 aa20.23■□□□□ 0.83
LIG1-216ENST00000598938 NKX2-4Q9H2Z4 354 aa20.23■□□□□ 0.83
LIG1-216ENST00000598938 SUGCTQ9HAC7 445 aa20.23■□□□□ 0.83
LIG1-216ENST00000598938 XPNPEP1Q9NQW7 623 aa20.23■□□□□ 0.83
LIG1-216ENST00000598938 RSPH10B2B2RC85 870 aa20.22■□□□□ 0.83
LIG1-216ENST00000598938 PARNO95453 639 aaKnown RBP20.22■□□□□ 0.83
LIG1-216ENST00000598938 PFKMP08237 780 aa20.22■□□□□ 0.83
LIG1-216ENST00000598938 CTSHP09668 335 aa20.22■□□□□ 0.83
LIG1-216ENST00000598938 RSPH10BP0C881 870 aa20.22■□□□□ 0.83
LIG1-216ENST00000598938 IGFBP4P22692 258 aa20.22■□□□□ 0.83
LIG1-216ENST00000598938 RFC2P35250 354 aa20.22■□□□□ 0.83
LIG1-216ENST00000598938 DRP2Q13474 957 aa20.22■□□□□ 0.83
LIG1-216ENST00000598938 MBTPS1Q14703 1052 aa20.22■□□□□ 0.83
LIG1-216ENST00000598938 AAK1Q2M2I8 961 aa20.22■□□□□ 0.83
LIG1-216ENST00000598938 MAP7D2Q96T17 732 aa20.22■□□□□ 0.83
LIG1-216ENST00000598938 ATP6V0A4Q9HBG4 840 aa20.22■□□□□ 0.83
LIG1-216ENST00000598938 LOXHD1Q8IVV2 1947 aa20.21■□□□□ 0.83
LIG1-216ENST00000598938 USO1O60763 962 aaKnown RBP20.21■□□□□ 0.83
LIG1-216ENST00000598938 CHRNA1P02708 482 aa20.21■□□□□ 0.83
LIG1-216ENST00000598938 VTNP04004 478 aa20.21■□□□□ 0.83
LIG1-216ENST00000598938 DNM2P50570 870 aa20.21■□□□□ 0.83
LIG1-216ENST00000598938 GPNMBQ14956 572 aa20.21■□□□□ 0.83
LIG1-216ENST00000598938 IER5Q5VY09 327 aa20.21■□□□□ 0.83
LIG1-216ENST00000598938 RESP18Q5W5W9 173 aa20.21■□□□□ 0.83
LIG1-216ENST00000598938 PADI6Q6TGC4 694 aa20.21■□□□□ 0.83
LIG1-216ENST00000598938 SYT2Q8N9I0 419 aaPredicted RBP20.21■□□□□ 0.83
LIG1-216ENST00000598938 RASSF8Q8NHQ8 419 aa20.21■□□□□ 0.83
LIG1-216ENST00000598938 VWCEQ96DN2 955 aa20.21■□□□□ 0.83
LIG1-216ENST00000598938 MTRQ99707 1265 aa20.21■□□□□ 0.83
LIG1-216ENST00000598938 GDPD2Q9HCC8 539 aa20.21■□□□□ 0.83
LIG1-216ENST00000598938 BMP2KQ9NSY1 1161 aaPredicted RBP20.21■□□□□ 0.83
LIG1-216ENST00000598938 BLOC1S4Q9NUP1 217 aa20.21■□□□□ 0.83
LIG1-216ENST00000598938 CCDC39Q9UFE4 941 aa20.21■□□□□ 0.83
LIG1-216ENST00000598938 AKT3Q9Y243 479 aa20.21■□□□□ 0.83
LIG1-216ENST00000598938 YBX2Q9Y2T7 364 aaKnown RBP20.21■□□□□ 0.83
LIG1-216ENST00000598938 PCDHA11Q9Y5I1 949 aa20.21■□□□□ 0.83
LIG1-216ENST00000598938 TRPV2Q9Y5S1 764 aa20.21■□□□□ 0.83
LIG1-216ENST00000598938 CDY2AQ9Y6F7 541 aa20.21■□□□□ 0.83
LIG1-216ENST00000598938 TCHHQ07283 1943 aa20.2■□□□□ 0.82
LIG1-216ENST00000598938 A0A087X0B3 334 aa20.2■□□□□ 0.82
LIG1-216ENST00000598938 PLA2G5P39877 138 aa20.2■□□□□ 0.82
LIG1-216ENST00000598938 TMEM62Q0P6H9 643 aa20.2■□□□□ 0.82
LIG1-216ENST00000598938 PPP2R2DQ66LE6 453 aa20.2■□□□□ 0.82
LIG1-216ENST00000598938 ADALQ6DHV7 355 aa20.2■□□□□ 0.82
LIG1-216ENST00000598938 OTOP2Q7RTS6 562 aa20.2■□□□□ 0.82
LIG1-216ENST00000598938 ZNF710Q8N1W2 664 aa20.2■□□□□ 0.82
LIG1-216ENST00000598938 TCP11Q8WWU5 503 aa20.2■□□□□ 0.82
LIG1-216ENST00000598938 RAD54LQ92698 747 aa20.2■□□□□ 0.82
LIG1-216ENST00000598938 TMEM143Q96AN5 459 aa20.2■□□□□ 0.82
LIG1-216ENST00000598938 CELF4Q9BZC1 486 aaKnown RBP20.2■□□□□ 0.82
LIG1-216ENST00000598938 SUCLA2Q9P2R7 463 aaPredicted RBP20.2■□□□□ 0.82
LIG1-216ENST00000598938 SLC4A7Q9Y6M7 1214 aa20.2■□□□□ 0.82
LIG1-216ENST00000598938 EVPLQ92817 2033 aa20.2■□□□□ 0.82
LIG1-216ENST00000598938 SIP14410 1827 aa20.2■□□□□ 0.82
LIG1-216ENST00000598938 M0QZ92 97 aa20.19■□□□□ 0.82
LIG1-216ENST00000598938 NBNO60934 754 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms