RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 ST3GAL5Q9UNP4 418 aa12.29□□□□□ -0.44
SHKBP1-206ENST00000595523 PLXNA4Q9HCM2 1894 aa12.29□□□□□ -0.44
SHKBP1-206ENST00000595523 A0A087WWV3 80 aa12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 RFXAPO00287 272 aa12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 DARSP14868 501 aaKnown RBP12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 FOSL2P15408 326 aa12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 EIF4BP23588 611 aaKnown RBP12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 RFC5P40937 340 aa12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 FXR2P51116 673 aaKnown RBP eCLIP12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 NFX1Q12986 1120 aaKnown RBP12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 DSC3Q14574 896 aa12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 EMC2Q15006 297 aa12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 ECM1Q16610 540 aa12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 RILPL1Q5EBL4 403 aa12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 XKR9Q5GH70 373 aa12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 KSR1Q8IVT5 923 aa12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 IGSF22Q8N9C0 903 aa12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 SNX21Q969T3 373 aa12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 FTHL17Q9BXU8 183 aa12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 SUCLA2Q9P2R7 463 aaPredicted RBP12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 PPME1Q9Y570 386 aa12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 INSL6Q9Y581 213 aa12.28□□□□□ -0.44
SHKBP1-206ENST00000595523 A0A087WZ62 844 aa12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 CSDE1O75534 798 aaKnown RBP12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 LINC00271P0C7V0 271 aa12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 FGFR4P22455 802 aa12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 RARRES1P49788 294 aa12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 POLGP54098 1239 aaPredicted RBP12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 POTEGQ6S5H5 508 aa12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 OTUD6AQ7L8S5 288 aa12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 RHPN2Q8IUC4 686 aa12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 ZNF710Q8N1W2 664 aa12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 PIGOQ8TEQ8 1089 aa12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 NLRP7Q8WX94 980 aa12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 SLC7A3Q8WY07 619 aa12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 ARNTL2Q8WYA1 636 aa12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 TMEM143Q96AN5 459 aa12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 ZNF689Q96CS4 500 aaPredicted RBP12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 INTS4Q96HW7 963 aaKnown RBP12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 FDXACB1Q9BRP7 624 aaPredicted RBP12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 POLR3CQ9BUI4 534 aaPredicted RBP12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 TUFT1Q9NNX1 390 aa12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 ANKEF1Q9NU02 776 aa12.27□□□□□ -0.45
SHKBP1-206ENST00000595523 PP2D1A8MPX8 630 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 C9IYK1 514 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 LAD1O00515 517 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 GPR182O15218 404 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 LPXNO60711 386 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 DGKIO75912 1065 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 SYT1P21579 422 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 RPA1P27694 616 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 PRPHP41219 470 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 DNM2P50570 870 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 ERVK-21P61565 698 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 ATP2C1P98194 919 aaPredicted RBP12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 FERMT3Q86UX7 667 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 ZNF410Q86VK4 478 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 NPAS4Q8IUM7 802 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 PRPF31Q8WWY3 499 aaKnown RBP12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 YME1L1Q96TA2 773 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 ADAM2Q99965 735 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 JPH2Q9BR39 696 aaPredicted RBP12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 C17orf80Q9BSJ5 609 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 IFT122Q9HBG6 1241 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 RGS18Q9NS28 235 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 FOXD4L1Q9NU39 408 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 COL4A3BPQ9Y5P4 624 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 TTC28Q96AY4 2481 aa12.26□□□□□ -0.45
SHKBP1-206ENST00000595523 NCOR1O75376 2440 aa12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 VPS37CA5D8V6 355 aaPredicted RBP12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 XRCC6P12956 609 aaKnown RBP eCLIP12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 SARSP49591 514 aaKnown RBP12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 GATMP50440 423 aa12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 LAMTOR4Q0VGL1 99 aa12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 PDIA5Q14554 519 aa12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 MAFAQ8NHW3 353 aaPredicted RBP12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 PSPC1Q8WXF1 523 aaKnown RBP12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 NLRP4Q96MN2 994 aa12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 SCLT1Q96NL6 688 aa12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 TGS1Q96RS0 853 aaKnown RBP12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 GAS2L1Q99501 681 aaPredicted RBP12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 MTRQ99707 1265 aa12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 MMTAG2Q9BU76 263 aaKnown RBP12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 GCOM2Q9BZD3 368 aaPredicted RBP12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 MINDY3Q9H8M7 445 aa12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 LRWD1Q9UFC0 647 aa12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 DBR1Q9UK59 544 aaKnown RBP12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 MTUS1Q9ULD2 1270 aa12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 ADGRA3Q8IWK6 1321 aa12.25□□□□□ -0.45
SHKBP1-206ENST00000595523 DENND3A2RUS2 1198 aa12.24□□□□□ -0.45
SHKBP1-206ENST00000595523 TDRD15B5MCY1 1934 aaKnown RBP12.24□□□□□ -0.45
SHKBP1-206ENST00000595523 GAS2O43903 313 aaKnown RBP12.24□□□□□ -0.45
SHKBP1-206ENST00000595523 DGAT1O75907 488 aa12.24□□□□□ -0.45
SHKBP1-206ENST00000595523 PDCP20941 246 aa12.24□□□□□ -0.45
SHKBP1-206ENST00000595523 CDC25AP30304 524 aa12.24□□□□□ -0.45
SHKBP1-206ENST00000595523 CCT6AP40227 531 aaKnown RBP12.24□□□□□ -0.45
SHKBP1-206ENST00000595523 FAM189BP81408 668 aa12.24□□□□□ -0.45
SHKBP1-206ENST00000595523 CDC42EP1Q00587 391 aa12.24□□□□□ -0.45
SHKBP1-206ENST00000595523 RESTQ13127 1097 aa12.24□□□□□ -0.45
SHKBP1-206ENST00000595523 GRB10Q13322 594 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms