RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 MAFO75444 373 aaPredicted RBP16.92■□□□□ 0.3
TRIM28-205ENST00000595028 ATP2B1P20020 1258 aa16.92■□□□□ 0.3
TRIM28-205ENST00000595028 MCM7P33993 719 aa16.92■□□□□ 0.3
TRIM28-205ENST00000595028 GPC3P51654 580 aa16.92■□□□□ 0.3
TRIM28-205ENST00000595028 NLRP11P59045 1033 aaKnown RBP16.92■□□□□ 0.3
TRIM28-205ENST00000595028 NFX1Q12986 1120 aaKnown RBP16.92■□□□□ 0.3
TRIM28-205ENST00000595028 GRB10Q13322 594 aa16.92■□□□□ 0.3
TRIM28-205ENST00000595028 ORC2Q13416 577 aaPredicted RBP16.92■□□□□ 0.3
TRIM28-205ENST00000595028 DRP2Q13474 957 aa16.92■□□□□ 0.3
TRIM28-205ENST00000595028 GNL2Q13823 731 aaKnown RBP16.92■□□□□ 0.3
TRIM28-205ENST00000595028 RTN4RL1Q86UN2 441 aaPredicted RBP16.92■□□□□ 0.3
TRIM28-205ENST00000595028 NOSTRINQ8IVI9 506 aa16.92■□□□□ 0.3
TRIM28-205ENST00000595028 C4orf19Q8IY42 314 aa16.92■□□□□ 0.3
TRIM28-205ENST00000595028 GDPD5Q8WTR4 605 aa16.92■□□□□ 0.3
TRIM28-205ENST00000595028 HLA-CQ95604 372 aa16.92■□□□□ 0.3
TRIM28-205ENST00000595028 DYDC2Q96IM9 177 aa16.92■□□□□ 0.3
TRIM28-205ENST00000595028 TMEM60Q9H2L4 133 aa16.92■□□□□ 0.3
TRIM28-205ENST00000595028 ADAMTS10Q9H324 1103 aa16.92■□□□□ 0.3
TRIM28-205ENST00000595028 TTC12Q9H892 705 aaPredicted RBP16.92■□□□□ 0.3
TRIM28-205ENST00000595028 CYP26B1Q9NR63 512 aa16.92■□□□□ 0.3
TRIM28-205ENST00000595028 RGL1Q9NZL6 768 aa16.92■□□□□ 0.3
TRIM28-205ENST00000595028 PCDHA12Q9UN75 941 aa16.92■□□□□ 0.3
TRIM28-205ENST00000595028 PPME1Q9Y570 386 aa16.92■□□□□ 0.3
TRIM28-205ENST00000595028 GPR182O15218 404 aa16.91■□□□□ 0.3
TRIM28-205ENST00000595028 TXKP42681 527 aa16.91■□□□□ 0.3
TRIM28-205ENST00000595028 TRAPPC10P48553 1259 aa16.91■□□□□ 0.3
TRIM28-205ENST00000595028 CYP4A11Q02928 519 aa16.91■□□□□ 0.3
TRIM28-205ENST00000595028 NPAS4Q8IUM7 802 aa16.91■□□□□ 0.3
TRIM28-205ENST00000595028 CRIPAKQ8N1N5 446 aa16.91■□□□□ 0.3
TRIM28-205ENST00000595028 NEK9Q8TD19 979 aa16.91■□□□□ 0.3
TRIM28-205ENST00000595028 SCLT1Q96NL6 688 aa16.91■□□□□ 0.3
TRIM28-205ENST00000595028 SAMD11Q96NU1 681 aa16.91■□□□□ 0.3
TRIM28-205ENST00000595028 JPH2Q9BR39 696 aaPredicted RBP16.91■□□□□ 0.3
TRIM28-205ENST00000595028 C17orf80Q9BSJ5 609 aa16.91■□□□□ 0.3
TRIM28-205ENST00000595028 ZSWIM4Q9H7M6 989 aa16.91■□□□□ 0.3
TRIM28-205ENST00000595028 ST3GAL5Q9UNP4 418 aa16.91■□□□□ 0.3
TRIM28-205ENST00000595028 POTEMA6NI47 508 aa16.9■□□□□ 0.3
TRIM28-205ENST00000595028 PRR33A8MZF0 331 aa16.9■□□□□ 0.3
TRIM28-205ENST00000595028 MGEA5O60502 916 aa16.9■□□□□ 0.3
TRIM28-205ENST00000595028 EIF4BP23588 611 aaKnown RBP16.9■□□□□ 0.3
TRIM28-205ENST00000595028 U2AF2P26368 475 aaKnown RBP eCLIP16.9■□□□□ 0.3
TRIM28-205ENST00000595028 YWHABP31946 246 aaKnown RBP16.9■□□□□ 0.3
TRIM28-205ENST00000595028 NPEPPSP55786 919 aa16.9■□□□□ 0.3
TRIM28-205ENST00000595028 CTTNQ14247 550 aaKnown RBP16.9■□□□□ 0.3
TRIM28-205ENST00000595028 TTC38Q5R3I4 469 aa16.9■□□□□ 0.3
TRIM28-205ENST00000595028 ZNF668Q96K58 619 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-205ENST00000595028 CEP170P1Q96L14 293 aa16.9■□□□□ 0.3
TRIM28-205ENST00000595028 EIF2AK1Q9BQI3 630 aaKnown RBP16.9■□□□□ 0.3
TRIM28-205ENST00000595028 BACH2Q9BYV9 841 aa16.9■□□□□ 0.3
TRIM28-205ENST00000595028 NOL7Q9UMY1 257 aaKnown RBP16.9■□□□□ 0.3
TRIM28-205ENST00000595028 FNDC1Q4ZHG4 1894 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-205ENST00000595028 DENND3A2RUS2 1198 aa16.89■□□□□ 0.29
TRIM28-205ENST00000595028 DGKIO75912 1065 aa16.89■□□□□ 0.29
TRIM28-205ENST00000595028 SLITRK3O94933 977 aa16.89■□□□□ 0.29
TRIM28-205ENST00000595028 LYPLA2O95372 231 aa16.89■□□□□ 0.29
TRIM28-205ENST00000595028 OR52Z1P0C646 297 aa16.89■□□□□ 0.29
TRIM28-205ENST00000595028 STAG3L1P0CL83 205 aa16.89■□□□□ 0.29
TRIM28-205ENST00000595028 DARSP14868 501 aaKnown RBP16.89■□□□□ 0.29
TRIM28-205ENST00000595028 RFC5P40937 340 aa16.89■□□□□ 0.29
TRIM28-205ENST00000595028 SARSP49591 514 aaKnown RBP16.89■□□□□ 0.29
TRIM28-205ENST00000595028 DNM2P50570 870 aa16.89■□□□□ 0.29
TRIM28-205ENST00000595028 FIBCD1Q8N539 461 aa16.89■□□□□ 0.29
TRIM28-205ENST00000595028 FBXO22Q8NEZ5 403 aa16.89■□□□□ 0.29
TRIM28-205ENST00000595028 NLRP7Q8WX94 980 aa16.89■□□□□ 0.29
TRIM28-205ENST00000595028 SLC7A3Q8WY07 619 aa16.89■□□□□ 0.29
TRIM28-205ENST00000595028 ZNF689Q96CS4 500 aaPredicted RBP16.89■□□□□ 0.29
TRIM28-205ENST00000595028 ADAM2Q99965 735 aa16.89■□□□□ 0.29
TRIM28-205ENST00000595028 HSD17B14Q9BPX1 270 aa16.89■□□□□ 0.29
TRIM28-205ENST00000595028 DHX33Q9H6R0 707 aaKnown RBP16.89■□□□□ 0.29
TRIM28-205ENST00000595028 RGS18Q9NS28 235 aa16.89■□□□□ 0.29
TRIM28-205ENST00000595028 C1orf112Q9NSG2 853 aa16.89■□□□□ 0.29
TRIM28-205ENST00000595028 ATG2AQ2TAZ0 1938 aa16.88■□□□□ 0.29
TRIM28-205ENST00000595028 LINC00271P0C7V0 271 aa16.88■□□□□ 0.29
TRIM28-205ENST00000595028 GJB2P29033 226 aa16.88■□□□□ 0.29
TRIM28-205ENST00000595028 POLGP54098 1239 aaPredicted RBP16.88■□□□□ 0.29
TRIM28-205ENST00000595028 CDC42EP1Q00587 391 aa16.88■□□□□ 0.29
TRIM28-205ENST00000595028 DSC3Q14574 896 aa16.88■□□□□ 0.29
TRIM28-205ENST00000595028 EMC2Q15006 297 aa16.88■□□□□ 0.29
TRIM28-205ENST00000595028 ZNF174Q15697 407 aa16.88■□□□□ 0.29
TRIM28-205ENST00000595028 EPC2Q52LR7 807 aa16.88■□□□□ 0.29
TRIM28-205ENST00000595028 OTUD6AQ7L8S5 288 aa16.88■□□□□ 0.29
TRIM28-205ENST00000595028 ZNF410Q86VK4 478 aa16.88■□□□□ 0.29
TRIM28-205ENST00000595028 TPH2Q8IWU9 490 aa16.88■□□□□ 0.29
TRIM28-205ENST00000595028 EXOC8Q8IYI6 725 aa16.88■□□□□ 0.29
TRIM28-205ENST00000595028 ZNF579Q8NAF0 562 aaKnown RBP16.88■□□□□ 0.29
TRIM28-205ENST00000595028 SUCLA2Q9P2R7 463 aaPredicted RBP16.88■□□□□ 0.29
TRIM28-205ENST00000595028 C9IYK1 514 aa16.87■□□□□ 0.29
TRIM28-205ENST00000595028 NHLH1Q02575 133 aa16.87■□□□□ 0.29
TRIM28-205ENST00000595028 BTG3Q14201 252 aaPredicted RBP16.87■□□□□ 0.29
TRIM28-205ENST00000595028 NBR1Q14596 966 aa16.87■□□□□ 0.29
TRIM28-205ENST00000595028 XKR9Q5GH70 373 aa16.87■□□□□ 0.29
TRIM28-205ENST00000595028 SLC24A5Q71RS6 500 aa16.87■□□□□ 0.29
TRIM28-205ENST00000595028 RHPN2Q8IUC4 686 aa16.87■□□□□ 0.29
TRIM28-205ENST00000595028 TMEM192Q8IY95 271 aa16.87■□□□□ 0.29
TRIM28-205ENST00000595028 CMTR2Q8IYT2 770 aaKnown RBP16.87■□□□□ 0.29
TRIM28-205ENST00000595028 GCOM2Q9BZD3 368 aaPredicted RBP16.87■□□□□ 0.29
TRIM28-205ENST00000595028 BMP2KQ9NSY1 1161 aaPredicted RBP16.87■□□□□ 0.29
TRIM28-205ENST00000595028 LMCD1Q9NZU5 365 aa16.87■□□□□ 0.29
TRIM28-205ENST00000595028 LRFN2Q9ULH4 789 aa16.87■□□□□ 0.29
TRIM28-205ENST00000595028 RWDD3Q9Y3V2 267 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms