RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 RTKN2Q8IZC4 609 aa6.71□□□□□ -1.34
SMAD4-216ENST00000593223 ZCRB1Q8TBF4 217 aaKnown RBP6.71□□□□□ -1.34
SMAD4-216ENST00000593223 AJUBAQ96IF1 538 aa6.71□□□□□ -1.34
SMAD4-216ENST00000593223 ZNF496Q96IT1 587 aaPredicted RBP6.71□□□□□ -1.34
SMAD4-216ENST00000593223 ZDHHC5Q9C0B5 715 aa6.71□□□□□ -1.34
SMAD4-216ENST00000593223 XYLT2Q9H1B5 865 aa6.71□□□□□ -1.34
SMAD4-216ENST00000593223 SAE1Q9UBE0 346 aaPredicted RBP6.71□□□□□ -1.34
SMAD4-216ENST00000593223 MAGEL2Q9UJ55 1249 aa6.71□□□□□ -1.34
SMAD4-216ENST00000593223 ATP8A1Q9Y2Q0 1164 aa6.71□□□□□ -1.34
SMAD4-216ENST00000593223 HMGXB3Q12766 1538 aa6.71□□□□□ -1.34
SMAD4-216ENST00000593223 IBSPP21815 317 aaPredicted RBP6.7□□□□□ -1.34
SMAD4-216ENST00000593223 CSF2RBP32927 897 aa6.7□□□□□ -1.34
SMAD4-216ENST00000593223 CNR2P34972 360 aa6.7□□□□□ -1.34
SMAD4-216ENST00000593223 STAT5BP51692 787 aa6.7□□□□□ -1.34
SMAD4-216ENST00000593223 DGKDQ16760 1214 aa6.7□□□□□ -1.34
SMAD4-216ENST00000593223 RNF219Q5W0B1 726 aaPredicted RBP6.7□□□□□ -1.34
SMAD4-216ENST00000593223 TMEM200BQ69YZ2 307 aa6.7□□□□□ -1.34
SMAD4-216ENST00000593223 KIAA1841Q6NSI8 718 aa6.7□□□□□ -1.34
SMAD4-216ENST00000593223 FRMD5Q7Z6J6 570 aa6.7□□□□□ -1.34
SMAD4-216ENST00000593223 PLEKHH3Q7Z736 793 aa6.7□□□□□ -1.34
SMAD4-216ENST00000593223 FERMT3Q86UX7 667 aa6.7□□□□□ -1.34
SMAD4-216ENST00000593223 DDX42Q86XP3 938 aaKnown RBP eCLIP6.7□□□□□ -1.34
SMAD4-216ENST00000593223 SPATS2Q86XZ4 545 aaKnown RBP6.7□□□□□ -1.34
SMAD4-216ENST00000593223 CLRN3Q8NCR9 226 aa6.7□□□□□ -1.34
SMAD4-216ENST00000593223 KATNBL1Q9H079 304 aa6.7□□□□□ -1.34
SMAD4-216ENST00000593223 ADAM7Q9H2U9 754 aa6.7□□□□□ -1.34
SMAD4-216ENST00000593223 SEMA4AQ9H3S1 761 aa6.7□□□□□ -1.34
SMAD4-216ENST00000593223 JADE2Q9NQC1 790 aa6.7□□□□□ -1.34
SMAD4-216ENST00000593223 KCMF1Q9P0J7 381 aa6.7□□□□□ -1.34
SMAD4-216ENST00000593223 FAM184BQ9ULE4 1060 aa6.7□□□□□ -1.34
SMAD4-216ENST00000593223 SYNPO2Q9UMS6 1093 aa6.7□□□□□ -1.34
SMAD4-216ENST00000593223 INVSQ9Y283 1065 aa6.7□□□□□ -1.34
SMAD4-216ENST00000593223 COL4A3BPQ9Y5P4 624 aa6.7□□□□□ -1.34
SMAD4-216ENST00000593223 GPR39O43194 453 aa6.69□□□□□ -1.34
SMAD4-216ENST00000593223 ZNF888P0CJ79 500 aaPredicted RBP6.69□□□□□ -1.34
SMAD4-216ENST00000593223 EIF4HQ15056 248 aaKnown RBP6.69□□□□□ -1.34
SMAD4-216ENST00000593223 UBXN11Q5T124 520 aa6.69□□□□□ -1.34
SMAD4-216ENST00000593223 LHFPL2Q6ZUX7 228 aa6.69□□□□□ -1.34
SMAD4-216ENST00000593223 OR5AN1Q8NGI8 311 aa6.69□□□□□ -1.34
SMAD4-216ENST00000593223 MBD6Q96DN6 1003 aa6.69□□□□□ -1.34
SMAD4-216ENST00000593223 CHMP4AQ9BY43 222 aa6.69□□□□□ -1.34
SMAD4-216ENST00000593223 ANO3Q9BYT9 981 aa6.69□□□□□ -1.34
SMAD4-216ENST00000593223 MTG2Q9H4K7 406 aa6.69□□□□□ -1.34
SMAD4-216ENST00000593223 PTPN22Q9Y2R2 807 aa6.69□□□□□ -1.34
SMAD4-216ENST00000593223 ZNF536O15090 1300 aa6.69□□□□□ -1.34
SMAD4-216ENST00000593223 ZNF608Q9ULD9 1512 aaPredicted RBP6.68□□□□□ -1.34
SMAD4-216ENST00000593223 B4GALT3O60512 393 aa6.68□□□□□ -1.34
SMAD4-216ENST00000593223 PCDH8O95206 1070 aa6.68□□□□□ -1.34
SMAD4-216ENST00000593223 POU3F3P20264 500 aaPredicted RBP6.68□□□□□ -1.34
SMAD4-216ENST00000593223 HOXA5P20719 270 aa6.68□□□□□ -1.34
SMAD4-216ENST00000593223 PTPROQ16827 1216 aa6.68□□□□□ -1.34
SMAD4-216ENST00000593223 FBLN7Q53RD9 439 aa6.68□□□□□ -1.34
SMAD4-216ENST00000593223 ZMAT1Q5H9K5 638 aa6.68□□□□□ -1.34
SMAD4-216ENST00000593223 UNQ6494/PRO21346Q6UXR6 183 aa6.68□□□□□ -1.34
SMAD4-216ENST00000593223 ARHGEF18Q6ZSZ5 1173 aa6.68□□□□□ -1.34
SMAD4-216ENST00000593223 CXorf67Q86X51 503 aaPredicted RBP6.68□□□□□ -1.34
SMAD4-216ENST00000593223 DYDC2Q96IM9 177 aa6.68□□□□□ -1.34
SMAD4-216ENST00000593223 NOL10Q9BSC4 688 aaKnown RBP6.68□□□□□ -1.34
SMAD4-216ENST00000593223 TOPORSQ9NS56 1045 aaPredicted RBP6.68□□□□□ -1.34
SMAD4-216ENST00000593223 DUSP10Q9Y6W6 482 aa6.68□□□□□ -1.34
SMAD4-216ENST00000593223 ELL2O00472 640 aaPredicted RBP6.67□□□□□ -1.34
SMAD4-216ENST00000593223 MAFO75444 373 aaPredicted RBP6.67□□□□□ -1.34
SMAD4-216ENST00000593223 CLEC2LP0C7M8 214 aa6.67□□□□□ -1.34
SMAD4-216ENST00000593223 AMPD3Q01432 767 aa6.67□□□□□ -1.34
SMAD4-216ENST00000593223 FAPQ12884 760 aa6.67□□□□□ -1.34
SMAD4-216ENST00000593223 SURF1Q15526 300 aa6.67□□□□□ -1.34
SMAD4-216ENST00000593223 CCDC62Q6P9F0 684 aa6.67□□□□□ -1.34
SMAD4-216ENST00000593223 LARP4Q71RC2 724 aaKnown RBP eCLIP6.67□□□□□ -1.34
SMAD4-216ENST00000593223 KANSL1Q7Z3B3 1105 aa6.67□□□□□ -1.34
SMAD4-216ENST00000593223 COG1Q8WTW3 980 aa6.67□□□□□ -1.34
SMAD4-216ENST00000593223 KIAA1683Q9H0B3 1180 aa6.67□□□□□ -1.34
SMAD4-216ENST00000593223 PCDH12Q9NPG4 1184 aa6.67□□□□□ -1.34
SMAD4-216ENST00000593223 DENND2AQ9ULE3 1009 aa6.67□□□□□ -1.34
SMAD4-216ENST00000593223 USP18Q9UMW8 372 aa6.67□□□□□ -1.34
SMAD4-216ENST00000593223 MYPNQ86TC9 1320 aa6.67□□□□□ -1.34
SMAD4-216ENST00000593223 PRSS38A1L453 326 aa6.66□□□□□ -1.34
SMAD4-216ENST00000593223 GOLGA8AA7E2F4 631 aa6.66□□□□□ -1.34
SMAD4-216ENST00000593223 GOLGA8BA8MQT2 603 aa6.66□□□□□ -1.34
SMAD4-216ENST00000593223 NCLP19338 710 aaKnown RBP6.66□□□□□ -1.34
SMAD4-216ENST00000593223 MRE11P49959 708 aa6.66□□□□□ -1.34
SMAD4-216ENST00000593223 ANTXR2P58335 489 aa6.66□□□□□ -1.34
SMAD4-216ENST00000593223 PCOLCEQ15113 449 aa6.66□□□□□ -1.34
SMAD4-216ENST00000593223 ZBTB41Q5SVQ8 909 aa6.66□□□□□ -1.34
SMAD4-216ENST00000593223 TRIM68Q6AZZ1 485 aa6.66□□□□□ -1.34
SMAD4-216ENST00000593223 TTLL10Q6ZVT0 673 aa6.66□□□□□ -1.34
SMAD4-216ENST00000593223 BMP8AQ7Z5Y6 402 aa6.66□□□□□ -1.34
SMAD4-216ENST00000593223 AHCYL2Q96HN2 611 aaKnown RBP6.66□□□□□ -1.34
SMAD4-216ENST00000593223 HIST1H2AHQ96KK5 128 aa6.66□□□□□ -1.34
SMAD4-216ENST00000593223 TEPSINQ96N21 525 aa6.66□□□□□ -1.34
SMAD4-216ENST00000593223 HIST1H2AJQ99878 128 aa6.66□□□□□ -1.34
SMAD4-216ENST00000593223 POLR3BQ9NW08 1133 aaPredicted RBP6.66□□□□□ -1.34
SMAD4-216ENST00000593223 SLC5A4Q9NY91 659 aa6.66□□□□□ -1.34
SMAD4-216ENST00000593223 A0A0A6YYJ9 748 aa6.65□□□□□ -1.34
SMAD4-216ENST00000593223 OPHN1O60890 802 aa6.65□□□□□ -1.34
SMAD4-216ENST00000593223 H2AFYO75367 372 aaKnown RBP6.65□□□□□ -1.34
SMAD4-216ENST00000593223 SCAND1P57086 179 aa6.65□□□□□ -1.34
SMAD4-216ENST00000593223 SESN2P58004 480 aaPredicted RBP6.65□□□□□ -1.34
SMAD4-216ENST00000593223 PPP2CBP62714 309 aa6.65□□□□□ -1.34
SMAD4-216ENST00000593223 PPP2CAP67775 309 aa6.65□□□□□ -1.34
SMAD4-216ENST00000593223 FAM50AQ14320 339 aaKnown RBP6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms