RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 CIITAP33076 1130 aa13.15□□□□□ -0.3
LIG3-207ENST00000586119 CCT2P78371 535 aaKnown RBP13.15□□□□□ -0.3
LIG3-207ENST00000586119 FGD1P98174 961 aa13.15□□□□□ -0.3
LIG3-207ENST00000586119 PLCB3Q01970 1234 aa13.15□□□□□ -0.3
LIG3-207ENST00000586119 NTRK3Q16288 839 aa13.15□□□□□ -0.3
LIG3-207ENST00000586119 LONRF3Q496Y0 759 aa13.15□□□□□ -0.3
LIG3-207ENST00000586119 ANKRD54Q6NXT1 300 aa13.15□□□□□ -0.3
LIG3-207ENST00000586119 BMP8AQ7Z5Y6 402 aa13.15□□□□□ -0.3
LIG3-207ENST00000586119 REXO1Q8N1G1 1221 aaKnown RBP13.15□□□□□ -0.3
LIG3-207ENST00000586119 KCNB2Q92953 911 aa13.15□□□□□ -0.3
LIG3-207ENST00000586119 TCF25Q9BQ70 676 aa13.15□□□□□ -0.3
LIG3-207ENST00000586119 LARP6Q9BRS8 491 aaKnown RBP13.15□□□□□ -0.3
LIG3-207ENST00000586119 TMEM117Q9H0C3 514 aa13.15□□□□□ -0.3
LIG3-207ENST00000586119 NCOA5Q9HCD5 579 aaKnown RBP13.15□□□□□ -0.3
LIG3-207ENST00000586119 DISC1Q9NRI5 854 aa13.15□□□□□ -0.3
LIG3-207ENST00000586119 SNX14Q9Y5W7 946 aa13.15□□□□□ -0.3
LIG3-207ENST00000586119 KMT2EQ8IZD2 1858 aa13.14□□□□□ -0.31
LIG3-207ENST00000586119 MAGEB2O15479 319 aa13.14□□□□□ -0.31
LIG3-207ENST00000586119 DTNBO60941 627 aa13.14□□□□□ -0.31
LIG3-207ENST00000586119 STBD1O95210 358 aa13.14□□□□□ -0.31
LIG3-207ENST00000586119 PDGFBP01127 241 aaPredicted RBP13.14□□□□□ -0.31
LIG3-207ENST00000586119 OATP04181 439 aa13.14□□□□□ -0.31
LIG3-207ENST00000586119 WEE2P0C1S8 567 aa13.14□□□□□ -0.31
LIG3-207ENST00000586119 ATF7P17544 494 aaPredicted RBP13.14□□□□□ -0.31
LIG3-207ENST00000586119 LAG3P18627 525 aa13.14□□□□□ -0.31
LIG3-207ENST00000586119 EIF4BP23588 611 aaKnown RBP13.14□□□□□ -0.31
LIG3-207ENST00000586119 GPC3P51654 580 aa13.14□□□□□ -0.31
LIG3-207ENST00000586119 VCPP55072 806 aaKnown RBP13.14□□□□□ -0.31
LIG3-207ENST00000586119 TCF15Q12870 199 aa13.14□□□□□ -0.31
LIG3-207ENST00000586119 ODR4Q5SWX8 454 aa13.14□□□□□ -0.31
LIG3-207ENST00000586119 TMEM184AQ6ZMB5 413 aa13.14□□□□□ -0.31
LIG3-207ENST00000586119 TEX2Q8IWB9 1127 aa13.14□□□□□ -0.31
LIG3-207ENST00000586119 SMAP1Q8IYB5 467 aaPredicted RBP13.14□□□□□ -0.31
LIG3-207ENST00000586119 HELQQ8TDG4 1101 aa13.14□□□□□ -0.31
LIG3-207ENST00000586119 ASIC4Q96FT7 647 aa13.14□□□□□ -0.31
LIG3-207ENST00000586119 SLC26A6Q9BXS9 759 aa13.14□□□□□ -0.31
LIG3-207ENST00000586119 UNC45AQ9H3U1 944 aa13.14□□□□□ -0.31
LIG3-207ENST00000586119 ENTPD7Q9NQZ7 604 aa13.14□□□□□ -0.31
LIG3-207ENST00000586119 CDC45O75419 566 aa13.13□□□□□ -0.31
LIG3-207ENST00000586119 ZSCAN20P17040 1043 aaPredicted RBP13.13□□□□□ -0.31
LIG3-207ENST00000586119 RCAN1P53805 252 aa13.13□□□□□ -0.31
LIG3-207ENST00000586119 SETQ01105 290 aaPredicted RBP13.13□□□□□ -0.31
LIG3-207ENST00000586119 PRKCEQ02156 737 aa13.13□□□□□ -0.31
LIG3-207ENST00000586119 KRT32Q14532 448 aa13.13□□□□□ -0.31
LIG3-207ENST00000586119 TMC7Q7Z402 723 aa13.13□□□□□ -0.31
LIG3-207ENST00000586119 ZNF598Q86UK7 904 aaKnown RBP13.13□□□□□ -0.31
LIG3-207ENST00000586119 SLC39A11Q8N1S5 342 aa13.13□□□□□ -0.31
LIG3-207ENST00000586119 C12orf76Q8N812 135 aaPredicted RBP13.13□□□□□ -0.31
LIG3-207ENST00000586119 AUTS2Q8WXX7 1259 aa13.13□□□□□ -0.31
LIG3-207ENST00000586119 LPPQ93052 612 aa13.13□□□□□ -0.31
LIG3-207ENST00000586119 ZNF558Q96NG5 402 aa13.13□□□□□ -0.31
LIG3-207ENST00000586119 CEP89Q96ST8 783 aa13.13□□□□□ -0.31
LIG3-207ENST00000586119 CDCA3Q99618 268 aaPredicted RBP13.13□□□□□ -0.31
LIG3-207ENST00000586119 KCNH6Q9H252 994 aa13.13□□□□□ -0.31
LIG3-207ENST00000586119 SMOC2Q9H3U7 446 aa13.13□□□□□ -0.31
LIG3-207ENST00000586119 NRBP2Q9NSY0 501 aa13.13□□□□□ -0.31
LIG3-207ENST00000586119 PUF60Q9UHX1 559 aaKnown RBP13.13□□□□□ -0.31
LIG3-207ENST00000586119 LZTS1Q9Y250 596 aa13.13□□□□□ -0.31
LIG3-207ENST00000586119 CCDC196A0A1B0GTZ2 297 aa13.12□□□□□ -0.31
LIG3-207ENST00000586119 MEIS3P2A8K0S8 358 aa13.12□□□□□ -0.31
LIG3-207ENST00000586119 WDR64B1ANS9 1081 aa13.12□□□□□ -0.31
LIG3-207ENST00000586119 CLASP2O75122 1294 aaKnown RBP13.12□□□□□ -0.31
LIG3-207ENST00000586119 HMGB1P09429 215 aaKnown RBP13.12□□□□□ -0.31
LIG3-207ENST00000586119 DARSP14868 501 aaKnown RBP13.12□□□□□ -0.31
LIG3-207ENST00000586119 RPS6KB1P23443 525 aa13.12□□□□□ -0.31
LIG3-207ENST00000586119 GNA11P29992 359 aa13.12□□□□□ -0.31
LIG3-207ENST00000586119 PDIA3P30101 505 aaKnown RBP13.12□□□□□ -0.31
LIG3-207ENST00000586119 HSPA4P34932 840 aa13.12□□□□□ -0.31
LIG3-207ENST00000586119 TARBP2Q15633 366 aaKnown RBP13.12□□□□□ -0.31
LIG3-207ENST00000586119 MTERF2Q49AM1 385 aa13.12□□□□□ -0.31
LIG3-207ENST00000586119 PDE12Q6L8Q7 609 aaKnown RBP13.12□□□□□ -0.31
LIG3-207ENST00000586119 BLOC1S2Q6QNY1 142 aa13.12□□□□□ -0.31
LIG3-207ENST00000586119 TMEM173Q86WV6 379 aaPredicted RBP13.12□□□□□ -0.31
LIG3-207ENST00000586119 KSR1Q8IVT5 923 aa13.12□□□□□ -0.31
LIG3-207ENST00000586119 SLC5A5Q92911 643 aa13.12□□□□□ -0.31
LIG3-207ENST00000586119 MAP7D2Q96T17 732 aa13.12□□□□□ -0.31
LIG3-207ENST00000586119 FAM86C1Q9NVL1 165 aa13.12□□□□□ -0.31
LIG3-207ENST00000586119 SPG21Q9NZD8 308 aa13.12□□□□□ -0.31
LIG3-207ENST00000586119 TCEAL9Q9UHQ7 104 aa13.12□□□□□ -0.31
LIG3-207ENST00000586119 CEP131Q9UPN4 1083 aa13.12□□□□□ -0.31
LIG3-207ENST00000586119 A0A087WZ62 844 aa13.11□□□□□ -0.31
LIG3-207ENST00000586119 A0A0U1RQF3 1178 aa13.11□□□□□ -0.31
LIG3-207ENST00000586119 C2orf71A6NGG8 1288 aa13.11□□□□□ -0.31
LIG3-207ENST00000586119 TDP2O95551 362 aa13.11□□□□□ -0.31
LIG3-207ENST00000586119 TMOD1P28289 359 aa13.11□□□□□ -0.31
LIG3-207ENST00000586119 BCAR1P56945 870 aa13.11□□□□□ -0.31
LIG3-207ENST00000586119 NLRP5P59047 1200 aa13.11□□□□□ -0.31
LIG3-207ENST00000586119 SIGLEC14Q08ET2 396 aa13.11□□□□□ -0.31
LIG3-207ENST00000586119 ABI1Q8IZP0 508 aa13.11□□□□□ -0.31
LIG3-207ENST00000586119 LRRC43Q8N309 656 aa13.11□□□□□ -0.31
LIG3-207ENST00000586119 FBXL6Q8N531 539 aa13.11□□□□□ -0.31
LIG3-207ENST00000586119 MRPL43Q8N983 215 aaKnown RBP13.11□□□□□ -0.31
LIG3-207ENST00000586119 TBCKQ8TEA7 893 aa13.11□□□□□ -0.31
LIG3-207ENST00000586119 BCL7CQ8WUZ0 217 aaPredicted RBP13.11□□□□□ -0.31
LIG3-207ENST00000586119 NLRP7Q8WX94 980 aa13.11□□□□□ -0.31
LIG3-207ENST00000586119 FAM167AQ96KS9 214 aa13.11□□□□□ -0.31
LIG3-207ENST00000586119 AIFM3Q96NN9 605 aa13.11□□□□□ -0.31
LIG3-207ENST00000586119 FDXACB1Q9BRP7 624 aaPredicted RBP13.11□□□□□ -0.31
LIG3-207ENST00000586119 AGXT2Q9BYV1 514 aa13.11□□□□□ -0.31
LIG3-207ENST00000586119 NGRNQ9NPE2 291 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms