RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	PTRH1	Q86Y79	214 aa	Known RBP	6	□□□□□ -1.45
SS18-223	ENST00000583595	MIER2	Q8N344	545 aa		6	□□□□□ -1.45
SS18-223	ENST00000583595	PPM1N	Q8N819	430 aa		6	□□□□□ -1.45
SS18-223	ENST00000583595	TMEM52	Q8NDY8	209 aa		6	□□□□□ -1.45
SS18-223	ENST00000583595	ACRBP	Q8NEB7	543 aa		6	□□□□□ -1.45
SS18-223	ENST00000583595	DIS3L	Q8TF46	1054 aa	Known RBP	6	□□□□□ -1.45
SS18-223	ENST00000583595	POF1B	Q8WVV4	589 aa		6	□□□□□ -1.45
SS18-223	ENST00000583595	TRMT2B	Q96GJ1	504 aa	Known RBP	6	□□□□□ -1.45
SS18-223	ENST00000583595	ZNF496	Q96IT1	587 aa	Predicted RBP	6	□□□□□ -1.45
SS18-223	ENST00000583595	CCDC138	Q96M89	665 aa		6	□□□□□ -1.45
SS18-223	ENST00000583595	SCLT1	Q96NL6	688 aa		6	□□□□□ -1.45
SS18-223	ENST00000583595	SENP7	Q9BQF6	1050 aa		6	□□□□□ -1.45
SS18-223	ENST00000583595	CSRNP2	Q9H175	543 aa		6	□□□□□ -1.45
SS18-223	ENST00000583595	ZMAT4	Q9H898	229 aa		6	□□□□□ -1.45
SS18-223	ENST00000583595	CLDND1	Q9NY35	253 aa		6	□□□□□ -1.45
SS18-223	ENST00000583595	SERPINB13	Q9UIV8	391 aa		6	□□□□□ -1.45
SS18-223	ENST00000583595	PCDHGB3	Q9Y5G1	929 aa		6	□□□□□ -1.45
SS18-223	ENST00000583595	TIMM13	Q9Y5L4	95 aa	Predicted RBP	6	□□□□□ -1.45
SS18-223	ENST00000583595	SETD1B	Q9UPS6	1966 aa	Known RBP	5.99	□□□□□ -1.45
SS18-223	ENST00000583595	KDM1A	O60341	852 aa		5.99	□□□□□ -1.45
SS18-223	ENST00000583595	OSM	P13725	252 aa		5.99	□□□□□ -1.45
SS18-223	ENST00000583595	PRKCA	P17252	672 aa		5.99	□□□□□ -1.45
SS18-223	ENST00000583595	TYRP1	P17643	537 aa		5.99	□□□□□ -1.45
SS18-223	ENST00000583595	SARS	P49591	514 aa	Known RBP	5.99	□□□□□ -1.45
SS18-223	ENST00000583595	GTF2A2	P52657	109 aa		5.99	□□□□□ -1.45
SS18-223	ENST00000583595	SRSF3	P84103	164 aa	Known RBP	5.99	□□□□□ -1.45
SS18-223	ENST00000583595	ALDH6A1	Q02252	535 aa	Known RBP	5.99	□□□□□ -1.45
SS18-223	ENST00000583595	TRIM14	Q14142	442 aa		5.99	□□□□□ -1.45
SS18-223	ENST00000583595	SIAH1	Q8IUQ4	282 aa		5.99	□□□□□ -1.45
SS18-223	ENST00000583595	NAT16	Q8N8M0	369 aa		5.99	□□□□□ -1.45
SS18-223	ENST00000583595	DPF3	Q92784	378 aa		5.99	□□□□□ -1.45
SS18-223	ENST00000583595	ORAI2	Q96SN7	254 aa		5.99	□□□□□ -1.45
SS18-223	ENST00000583595	ANO3	Q9BYT9	981 aa		5.99	□□□□□ -1.45
SS18-223	ENST00000583595	BHMT2	Q9H2M3	363 aa		5.99	□□□□□ -1.45
SS18-223	ENST00000583595	GCM1	Q9NP62	436 aa		5.99	□□□□□ -1.45
SS18-223	ENST00000583595	EDAR	Q9UNE0	448 aa		5.99	□□□□□ -1.45
SS18-223	ENST00000583595	C7orf72	A4D263	438 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	SCD	O00767	359 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	NKRF	O15226	690 aa	Known RBP eCLIP	5.98	□□□□□ -1.45
SS18-223	ENST00000583595	SLC26A4	O43511	780 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	NUAK1	O60285	661 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	NDUFS2	O75306	463 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	TUSC2	O75896	110 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	AGXT	P21549	392 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	ARL4A	P40617	200 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	RENBP	P51606	427 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	ERVFRD-1	P60508	538 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	CYP4F8	P98187	520 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	KIF23	Q02241	960 aa	Predicted RBP	5.98	□□□□□ -1.45
SS18-223	ENST00000583595	LAPTM5	Q13571	262 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	MAPRE1	Q15691	268 aa	Known RBP	5.98	□□□□□ -1.45
SS18-223	ENST00000583595	GPR19	Q15760	415 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	TUBB8	Q3ZCM7	444 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	CPZ	Q66K79	652 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	CEP68	Q76N32	757 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	NUP43	Q8NFH3	380 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	RTF1	Q92541	710 aa	Known RBP	5.98	□□□□□ -1.45
SS18-223	ENST00000583595	EAF2	Q96CJ1	260 aa	Predicted RBP	5.98	□□□□□ -1.45
SS18-223	ENST00000583595	SGCZ	Q96LD1	299 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	FAM193B	Q96PV7	902 aa	Predicted RBP	5.98	□□□□□ -1.45
SS18-223	ENST00000583595	JMJD8	Q96S16	334 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	QRSL1	Q9H0R6	528 aa	Known RBP	5.98	□□□□□ -1.45
SS18-223	ENST00000583595	FAM204A	Q9H8W3	233 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	RSAD1	Q9HA92	442 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	AS3MT	Q9HBK9	375 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	SIRT5	Q9NXA8	310 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	BTG4	Q9NY30	223 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	IMPACT	Q9P2X3	320 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	TUBD1	Q9UJT1	453 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	POLH	Q9Y253	713 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	GPR45	Q9Y5Y3	372 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	RPS6KL1	Q9Y6S9	549 aa		5.98	□□□□□ -1.45
SS18-223	ENST00000583595	HRK	O00198	91 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	HRG	P04196	525 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	MPO	P05164	745 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	CLEC2L	P0C7M8	214 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	VIPR1	P32241	457 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	MTNR1B	P49286	362 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	ADK	P55263	362 aa	Known RBP	5.97	□□□□□ -1.45
SS18-223	ENST00000583595	YBX1	P67809	324 aa	Known RBP	5.97	□□□□□ -1.45
SS18-223	ENST00000583595	SEMA5A	Q13591	1074 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	KRT72	Q14CN4	511 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	SEC23A	Q15436	765 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	SLC4A8	Q2Y0W8	1093 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	ALF	Q53S48	1182 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	HLA-DQA1	Q5Y7H0	255 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	CCDC70	Q6NSX1	233 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	ESRP1	Q6NXG1	681 aa	Known RBP	5.97	□□□□□ -1.45
SS18-223	ENST00000583595	HHIPL2	Q6UWX4	724 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	AMIGO3	Q86WK7	504 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	CAMKK1	Q8N5S9	505 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	SH3RF2	Q8TEC5	729 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	ATXN2L	Q8WWM7	1075 aa	Known RBP	5.97	□□□□□ -1.45
SS18-223	ENST00000583595	PTCHD1	Q96NR3	888 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	MAP3K14	Q99558	947 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	SEMA4A	Q9H3S1	761 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	PCIF1	Q9H4Z3	704 aa		5.97	□□□□□ -1.45
SS18-223	ENST00000583595	TRMT13	Q9NUP7	481 aa	Known RBP	5.97	□□□□□ -1.45
SS18-223	ENST00000583595	MBD1	Q9UIS9	605 aa	Predicted RBP	5.97	□□□□□ -1.45
SS18-223	ENST00000583595	MSRA	Q9UJ68	235 aa		5.97	□□□□□ -1.45

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