RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 ACLYP53396 1101 aa10.89□□□□□ -0.67
CIITA-208ENST00000572665 SMAD3P84022 425 aaKnown RBP10.89□□□□□ -0.67
CIITA-208ENST00000572665 TLE2Q04725 743 aa10.89□□□□□ -0.67
CIITA-208ENST00000572665 ACVR2BQ13705 512 aa10.89□□□□□ -0.67
CIITA-208ENST00000572665 ANKRD33Q7Z3H0 272 aa10.89□□□□□ -0.67
CIITA-208ENST00000572665 LRRC47Q8N1G4 583 aaKnown RBP10.89□□□□□ -0.67
CIITA-208ENST00000572665 PI4K2BQ8TCG2 481 aa10.89□□□□□ -0.67
CIITA-208ENST00000572665 STAG1Q8WVM7 1258 aa10.89□□□□□ -0.67
CIITA-208ENST00000572665 GAL3ST3Q96A11 431 aa10.89□□□□□ -0.67
CIITA-208ENST00000572665 CORO1BQ9BR76 489 aa10.89□□□□□ -0.67
CIITA-208ENST00000572665 SEZ6LQ9BYH1 1024 aa10.89□□□□□ -0.67
CIITA-208ENST00000572665 KCNK4Q9NYG8 393 aa10.89□□□□□ -0.67
CIITA-208ENST00000572665 PNMA2Q9UL42 364 aa10.89□□□□□ -0.67
CIITA-208ENST00000572665 RIPK3Q9Y572 518 aa10.89□□□□□ -0.67
CIITA-208ENST00000572665 SUPT16HQ9Y5B9 1047 aaKnown RBP10.89□□□□□ -0.67
CIITA-208ENST00000572665 RANBP2P49792 3224 aaKnown RBP10.88□□□□□ -0.67
CIITA-208ENST00000572665 SYNRGQ9UMZ2 1314 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 TMEM265A0A087WTH1 108 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 SPDYE3A6NKU9 549 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 KIAA0355O15063 1070 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 ZEB2O60315 1214 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 GREM1O60565 184 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 ADAMTS4O75173 837 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 SNAI1O95863 264 aaPredicted RBP10.88□□□□□ -0.67
CIITA-208ENST00000572665 CTSBP07858 339 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 C6orf222P0C671 652 aaPredicted RBP10.88□□□□□ -0.67
CIITA-208ENST00000572665 TAL1P17542 331 aaPredicted RBP10.88□□□□□ -0.67
CIITA-208ENST00000572665 FPGSQ05932 587 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 SEPT6Q14141 434 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 SHHQ15465 462 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 SNAP47Q5SQN1 464 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 ANKRD45Q5TZF3 282 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 SCARA3Q6AZY7 606 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 RCSD1Q6JBY9 416 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 GOLM1Q8NBJ4 401 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 MPHOSPH6Q99547 160 aaKnown RBP10.88□□□□□ -0.67
CIITA-208ENST00000572665 USP26Q9BXU7 913 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 MIR1-1HGQ9H1L0 117 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 HELLSQ9NRZ9 838 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 CACNA2D2Q9NY47 1150 aa10.88□□□□□ -0.67
CIITA-208ENST00000572665 SZT2Q5T011 3432 aa10.87□□□□□ -0.67
CIITA-208ENST00000572665 MCM3APO60318 1980 aa10.87□□□□□ -0.67
CIITA-208ENST00000572665 A0A0U1RQG5 324 aaPredicted RBP10.87□□□□□ -0.67
CIITA-208ENST00000572665 LOC100289279A0A1B0GTE1 492 aa10.87□□□□□ -0.67
CIITA-208ENST00000572665 TRIM43BA6NCK2 446 aa10.87□□□□□ -0.67
CIITA-208ENST00000572665 RANBP6O60518 1105 aaKnown RBP10.87□□□□□ -0.67
CIITA-208ENST00000572665 PCP11498 1178 aaKnown RBP10.87□□□□□ -0.67
CIITA-208ENST00000572665 NT5C2P49902 561 aa10.87□□□□□ -0.67
CIITA-208ENST00000572665 RRP1P56182 461 aaKnown RBP10.87□□□□□ -0.67
CIITA-208ENST00000572665 GJA9P57773 515 aa10.87□□□□□ -0.67
CIITA-208ENST00000572665 KCNA10Q16322 511 aa10.87□□□□□ -0.67
CIITA-208ENST00000572665 CCDC144BQ3MJ40 725 aa10.87□□□□□ -0.67
CIITA-208ENST00000572665 CCDC129Q6ZRS4 1044 aa10.87□□□□□ -0.67
CIITA-208ENST00000572665 NOL8Q76FK4 1167 aaKnown RBP10.87□□□□□ -0.67
CIITA-208ENST00000572665 ARMCX2Q7L311 632 aa10.87□□□□□ -0.67
CIITA-208ENST00000572665 SLC43A3Q8NBI5 491 aa10.87□□□□□ -0.67
CIITA-208ENST00000572665 KLHDC9Q8NEP7 349 aa10.87□□□□□ -0.67
CIITA-208ENST00000572665 DCAF4Q8WV16 495 aa10.87□□□□□ -0.67
CIITA-208ENST00000572665 KCNB2Q92953 911 aa10.87□□□□□ -0.67
CIITA-208ENST00000572665 TRIM43Q96BQ3 446 aaPredicted RBP10.87□□□□□ -0.67
CIITA-208ENST00000572665 RNPC3Q96LT9 517 aaKnown RBP10.87□□□□□ -0.67
CIITA-208ENST00000572665 SEC62Q99442 399 aaKnown RBP10.87□□□□□ -0.67
CIITA-208ENST00000572665 TOMM22Q9NS69 142 aa10.87□□□□□ -0.67
CIITA-208ENST00000572665 KRT82Q9NSB4 513 aa10.87□□□□□ -0.67
CIITA-208ENST00000572665 HOMER2Q9NSB8 354 aa10.87□□□□□ -0.67
CIITA-208ENST00000572665 RNF146Q9NTX7 359 aa10.87□□□□□ -0.67
CIITA-208ENST00000572665 ANAPC4Q9UJX5 808 aa10.87□□□□□ -0.67
CIITA-208ENST00000572665 LOC102724159A0A0B4J2E5 919 aa10.86□□□□□ -0.67
CIITA-208ENST00000572665 FAM229AH3BQW9 127 aa10.86□□□□□ -0.67
CIITA-208ENST00000572665 ORC4O43929 436 aa10.86□□□□□ -0.67
CIITA-208ENST00000572665 CABYRO75952 493 aa10.86□□□□□ -0.67
CIITA-208ENST00000572665 ALAS1P13196 640 aa10.86□□□□□ -0.67
CIITA-208ENST00000572665 MCCP23508 829 aa10.86□□□□□ -0.67
CIITA-208ENST00000572665 PPIGQ13427 754 aaKnown RBP eCLIP10.86□□□□□ -0.67
CIITA-208ENST00000572665 GNL2Q13823 731 aaKnown RBP10.86□□□□□ -0.67
CIITA-208ENST00000572665 PWP2Q15269 919 aaKnown RBP10.86□□□□□ -0.67
CIITA-208ENST00000572665 ALX1Q15699 326 aa10.86□□□□□ -0.67
CIITA-208ENST00000572665 CCDC96Q2M329 555 aa10.86□□□□□ -0.67
CIITA-208ENST00000572665 MCMDC2Q4G0Z9 681 aa10.86□□□□□ -0.67
CIITA-208ENST00000572665 BNC2Q6ZN30 1099 aaPredicted RBP10.86□□□□□ -0.67
CIITA-208ENST00000572665 CCDC144CPQ8IYA2 1237 aa10.86□□□□□ -0.67
CIITA-208ENST00000572665 TMEM199Q8N511 208 aa10.86□□□□□ -0.67
CIITA-208ENST00000572665 GPRASP2Q96D09 838 aa10.86□□□□□ -0.67
CIITA-208ENST00000572665 EAF1Q96JC9 268 aaPredicted RBP10.86□□□□□ -0.67
CIITA-208ENST00000572665 NT5C1AQ9BXI3 368 aa10.86□□□□□ -0.67
CIITA-208ENST00000572665 AP5M1Q9H0R1 490 aa10.86□□□□□ -0.67
CIITA-208ENST00000572665 UPF3AQ9H1J1 476 aaKnown RBP10.86□□□□□ -0.67
CIITA-208ENST00000572665 CCDC86Q9H6F5 360 aaKnown RBP10.86□□□□□ -0.67
CIITA-208ENST00000572665 ADD3Q9UEY8 706 aaKnown RBP10.86□□□□□ -0.67
CIITA-208ENST00000572665 B4DLN1 442 aa10.85□□□□□ -0.67
CIITA-208ENST00000572665 F13A1P00488 732 aa10.85□□□□□ -0.67
CIITA-208ENST00000572665 TIMP1P01033 207 aa10.85□□□□□ -0.67
CIITA-208ENST00000572665 ASGR1P07306 291 aa10.85□□□□□ -0.67
CIITA-208ENST00000572665 MRPL12P52815 198 aaKnown RBP10.85□□□□□ -0.67
CIITA-208ENST00000572665 INSM1Q01101 510 aaPredicted RBP10.85□□□□□ -0.67
CIITA-208ENST00000572665 TNFAIP2Q03169 654 aa10.85□□□□□ -0.67
CIITA-208ENST00000572665 HDAC1Q13547 482 aaPredicted RBP10.85□□□□□ -0.67
CIITA-208ENST00000572665 MFSD5Q6N075 450 aa10.85□□□□□ -0.67
CIITA-208ENST00000572665 FAM133AQ8N9E0 248 aa10.85□□□□□ -0.67
CIITA-208ENST00000572665 MTIF3Q9H2K0 278 aaKnown RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms