RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 CBWD5Q5RIA9 395 aa24.81■■□□□ 1.56
VPS53-211ENST00000571805 NT5DC3Q86UY8 548 aa24.81■■□□□ 1.56
VPS53-211ENST00000571805 FAM178BQ8IXR5 827 aa24.81■■□□□ 1.56
VPS53-211ENST00000571805 RASGEF1CQ8N431 466 aa24.81■■□□□ 1.56
VPS53-211ENST00000571805 KCND2Q9NZV8 630 aa24.81■■□□□ 1.56
VPS53-211ENST00000571805 DNAJC12Q9UKB3 198 aa24.81■■□□□ 1.56
VPS53-211ENST00000571805 ODF2LQ9ULJ1 636 aa24.81■■□□□ 1.56
VPS53-211ENST00000571805 PGRMC1O00264 195 aaKnown RBP24.8■■□□□ 1.56
VPS53-211ENST00000571805 SF3B2Q13435 895 aaKnown RBP24.8■■□□□ 1.56
VPS53-211ENST00000571805 DRAP1Q14919 205 aaPredicted RBP24.8■■□□□ 1.56
VPS53-211ENST00000571805 ZNF577Q9BSK1 485 aa24.8■■□□□ 1.56
VPS53-211ENST00000571805 STRA6Q9BX79 667 aa24.8■■□□□ 1.56
VPS53-211ENST00000571805 HSPA9P38646 679 aaKnown RBP24.8■■□□□ 1.56
VPS53-211ENST00000571805 HS2ST1Q7LGA3 356 aa24.8■■□□□ 1.56
VPS53-211ENST00000571805 C10orf67Q8IYJ2 551 aa24.8■■□□□ 1.56
VPS53-211ENST00000571805 CHURC1Q8WUH1 139 aa24.8■■□□□ 1.56
VPS53-211ENST00000571805 HES6Q96HZ4 224 aa24.8■■□□□ 1.56
VPS53-211ENST00000571805 AP1M1Q9BXS5 423 aa24.8■■□□□ 1.56
VPS53-211ENST00000571805 WDR11Q9BZH6 1224 aa24.8■■□□□ 1.56
VPS53-211ENST00000571805 ZBTB21Q9ULJ3 1066 aa24.8■■□□□ 1.56
VPS53-211ENST00000571805 MRPL11Q9Y3B7 192 aaKnown RBP24.8■■□□□ 1.56
VPS53-211ENST00000571805 NOC2LQ9Y3T9 749 aaKnown RBP24.8■■□□□ 1.56
VPS53-211ENST00000571805 MYH11P35749 1972 aa24.79■■□□□ 1.56
VPS53-211ENST00000571805 EIF3HO15372 352 aaKnown RBP eCLIP24.79■■□□□ 1.567e-7■□□□□ 9.9
VPS53-211ENST00000571805 CYP2J2P51589 502 aa24.79■■□□□ 1.56
VPS53-211ENST00000571805 GNGT1P63211 74 aa24.79■■□□□ 1.56
VPS53-211ENST00000571805 ODR4Q5SWX8 454 aa24.79■■□□□ 1.56
VPS53-211ENST00000571805 GLYCTKQ8IVS8 523 aa24.79■■□□□ 1.56
VPS53-211ENST00000571805 SYCE1Q8N0S2 351 aa24.79■■□□□ 1.56
VPS53-211ENST00000571805 TMCO5BA8MYB1 307 aa24.79■■□□□ 1.56
VPS53-211ENST00000571805 SART1O43290 800 aaKnown RBP24.79■■□□□ 1.56
VPS53-211ENST00000571805 PPP2R5AQ15172 486 aa24.79■■□□□ 1.56
VPS53-211ENST00000571805 DAAM2Q86T65 1068 aa24.79■■□□□ 1.56
VPS53-211ENST00000571805 FRMD4BQ9Y2L6 1034 aa24.79■■□□□ 1.56
VPS53-211ENST00000571805 SPDYE2BA6NHP3 402 aa24.78■■□□□ 1.56
VPS53-211ENST00000571805 SPDYE6P0CI01 402 aa24.78■■□□□ 1.56
VPS53-211ENST00000571805 LMNB1P20700 586 aa24.78■■□□□ 1.56
VPS53-211ENST00000571805 GUCY2CP25092 1073 aa24.78■■□□□ 1.56
VPS53-211ENST00000571805 STXBP4Q6ZWJ1 553 aa24.78■■□□□ 1.56
VPS53-211ENST00000571805 SH2D3CQ8N5H7 860 aa24.78■■□□□ 1.56
VPS53-211ENST00000571805 CNKSR1Q969H4 720 aa24.78■■□□□ 1.56
VPS53-211ENST00000571805 INTS2Q9H0H0 1204 aaKnown RBP24.78■■□□□ 1.56
VPS53-211ENST00000571805 EHMT1Q9H9B1 1298 aa24.78■■□□□ 1.56
VPS53-211ENST00000571805 GOLGB1Q14789 3259 aaKnown RBP24.78■■□□□ 1.56
VPS53-211ENST00000571805 NCANO14594 1321 aa24.78■■□□□ 1.56
VPS53-211ENST00000571805 PPP1R37O75864 691 aa24.78■■□□□ 1.56
VPS53-211ENST00000571805 APBA3O96018 575 aa24.78■■□□□ 1.56
VPS53-211ENST00000571805 TRIM49P0CI25 452 aa24.78■■□□□ 1.56
VPS53-211ENST00000571805 TRIM49CP0CI26 452 aa24.78■■□□□ 1.56
VPS53-211ENST00000571805 MAPK7Q13164 816 aa24.78■■□□□ 1.56
VPS53-211ENST00000571805 CUL1Q13616 776 aa24.78■■□□□ 1.56
VPS53-211ENST00000571805 DNAJC21Q5F1R6 531 aaKnown RBP24.78■■□□□ 1.56
VPS53-211ENST00000571805 KCTD16Q68DU8 428 aa24.78■■□□□ 1.56
VPS53-211ENST00000571805 DAW1Q8N136 415 aa24.78■■□□□ 1.56
VPS53-211ENST00000571805 BANK1Q8NDB2 785 aa24.78■■□□□ 1.56
VPS53-211ENST00000571805 CLRN2A0PK11 232 aa24.77■■□□□ 1.56
VPS53-211ENST00000571805 PLA2G6O60733 806 aa24.77■■□□□ 1.56
VPS53-211ENST00000571805 SLC9A9Q8IVB4 645 aa24.77■■□□□ 1.56
VPS53-211ENST00000571805 FAM151AQ8WW52 585 aa24.77■■□□□ 1.56
VPS53-211ENST00000571805 LXNQ9BS40 222 aa24.77■■□□□ 1.56
VPS53-211ENST00000571805 RASSF4Q9H2L5 321 aa24.77■■□□□ 1.56
VPS53-211ENST00000571805 OSGEPQ9NPF4 335 aa24.77■■□□□ 1.56
VPS53-211ENST00000571805 CCDC188H7C350 402 aa24.76■■□□□ 1.55
VPS53-211ENST00000571805 TMEM253P0C7T8 217 aa24.76■■□□□ 1.55
VPS53-211ENST00000571805 SETQ01105 290 aaPredicted RBP24.76■■□□□ 1.55
VPS53-211ENST00000571805 EMC10Q5UCC4 262 aa24.76■■□□□ 1.55
VPS53-211ENST00000571805 C1orf131Q8NDD1 294 aaKnown RBP24.76■■□□□ 1.55
VPS53-211ENST00000571805 SLC35G2Q8TBE7 412 aa24.76■■□□□ 1.55
VPS53-211ENST00000571805 TEKT3Q9BXF9 490 aa24.76■■□□□ 1.55
VPS53-211ENST00000571805 DDX47Q9H0S4 455 aaKnown RBP24.76■■□□□ 1.55
VPS53-211ENST00000571805 VCPKMTQ9H867 229 aa24.76■■□□□ 1.55
VPS53-211ENST00000571805 TMOD2Q9NZR1 351 aa24.76■■□□□ 1.55
VPS53-211ENST00000571805 FRMD4AQ9P2Q2 1039 aaPredicted RBP24.76■■□□□ 1.55
VPS53-211ENST00000571805 APEX2Q9UBZ4 518 aa24.76■■□□□ 1.55
VPS53-211ENST00000571805 IPO5O00410 1097 aaKnown RBP24.76■■□□□ 1.55
VPS53-211ENST00000571805 KRIT1O00522 736 aa24.76■■□□□ 1.55
VPS53-211ENST00000571805 ITGA4P13612 1032 aa24.76■■□□□ 1.55
VPS53-211ENST00000571805 TTC19Q6DKK2 380 aaPredicted RBP24.76■■□□□ 1.55
VPS53-211ENST00000571805 PROCA1Q8NCQ7 364 aaPredicted RBP24.76■■□□□ 1.55
VPS53-211ENST00000571805 ZNF70Q9UC06 446 aaPredicted RBP24.76■■□□□ 1.55
VPS53-211ENST00000571805 CNTNAP1P78357 1384 aa24.76■■□□□ 1.55
VPS53-211ENST00000571805 LOXHD1Q8IVV2 1947 aa24.75■■□□□ 1.55
VPS53-211ENST00000571805 BUB1BO60566 1050 aaPredicted RBP24.75■■□□□ 1.55
VPS53-211ENST00000571805 CORO7P57737 925 aa24.75■■□□□ 1.55
VPS53-211ENST00000571805 PPATQ06203 517 aa24.75■■□□□ 1.55
VPS53-211ENST00000571805 LDHDQ86WU2 507 aa24.75■■□□□ 1.55
VPS53-211ENST00000571805 LMO3Q8TAP4 145 aa24.75■■□□□ 1.55
VPS53-211ENST00000571805 PSME4Q14997 1843 aa24.75■■□□□ 1.55
VPS53-211ENST00000571805 IGSF9BQ9UPX0 1349 aa24.75■■□□□ 1.55
VPS53-211ENST00000571805 A6NNZ2 444 aa24.75■■□□□ 1.55
VPS53-211ENST00000571805 PPIP5K2O43314 1243 aa24.75■■□□□ 1.55
VPS53-211ENST00000571805 HIP1RO75146 1068 aa24.75■■□□□ 1.55
VPS53-211ENST00000571805 SLC20A2Q08357 652 aa24.75■■□□□ 1.55
VPS53-211ENST00000571805 BFSP1Q12934 665 aa24.75■■□□□ 1.55
VPS53-211ENST00000571805 TUBB8Q3ZCM7 444 aa24.75■■□□□ 1.55
VPS53-211ENST00000571805 KDM7AQ6ZMT4 941 aa24.75■■□□□ 1.55
VPS53-211ENST00000571805 DDX42Q86XP3 938 aaKnown RBP eCLIP24.75■■□□□ 1.55
VPS53-211ENST00000571805 RFFLQ8WZ73 363 aa24.75■■□□□ 1.55
VPS53-211ENST00000571805 ARHGEF35A5YM69 484 aa24.74■■□□□ 1.55
VPS53-211ENST00000571805 MYL7Q01449 175 aa24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms