RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 SV2BQ7L1I2 683 aa11.61□□□□□ -0.55
CDH3-210ENST00000569117 CEP170P1Q96L14 293 aa11.61□□□□□ -0.55
CDH3-210ENST00000569117 LRRC27Q9C0I9 530 aa11.61□□□□□ -0.55
CDH3-210ENST00000569117 NUP62CLQ9H1M0 184 aa11.61□□□□□ -0.55
CDH3-210ENST00000569117 METRNQ9UJH8 293 aa11.61□□□□□ -0.55
CDH3-210ENST00000569117 SIP14410 1827 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 A0A087WWV3 80 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 A0A1W2PQ45 241 aaPredicted RBP11.6□□□□□ -0.55
CDH3-210ENST00000569117 A0A1W2PQY0 241 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 DGAT1O75907 488 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 SSBP05455 408 aaKnown RBP eCLIP11.6□□□□□ -0.55
CDH3-210ENST00000569117 SMIM10L2AP0DMW4 78 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 SMIM10L2BP0DMW5 78 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 GUCY2CP25092 1073 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 NPEPPSP55786 919 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 AMPD3Q01432 767 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 PPFIA1Q13136 1202 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 POSTNQ15063 836 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 MTERF2Q49AM1 385 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 CCDC183Q5T5S1 534 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 RINT1Q6NUQ1 792 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 C1orf186Q6ZWK4 172 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 TRMT1LQ7Z2T5 733 aaKnown RBP11.6□□□□□ -0.55
CDH3-210ENST00000569117 SESTD1Q86VW0 696 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 GPBP1Q86WP2 473 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 ANKLE1Q8NAG6 615 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 LMBR1Q8WVP7 490 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 SYAP1Q96A49 352 aaPredicted RBP11.6□□□□□ -0.55
CDH3-210ENST00000569117 PAGE5Q96GU1 130 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 GLT1D1Q96MS3 346 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 RUSC1Q9BVN2 902 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 TIPINQ9BVW5 301 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 TRIM9Q9C026 710 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 DHX33Q9H6R0 707 aaKnown RBP11.6□□□□□ -0.55
CDH3-210ENST00000569117 HOOK1Q9UJC3 728 aaKnown RBP11.6□□□□□ -0.55
CDH3-210ENST00000569117 NRCAMQ92823 1304 aa11.6□□□□□ -0.55
CDH3-210ENST00000569117 KIAA0100Q14667 2235 aaKnown RBP11.59□□□□□ -0.55
CDH3-210ENST00000569117 MYMKA6NI61 221 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 RRN3P2A6NIE6 340 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 GAS2O43903 313 aaKnown RBP11.59□□□□□ -0.55
CDH3-210ENST00000569117 USO1O60763 962 aaKnown RBP11.59□□□□□ -0.55
CDH3-210ENST00000569117 C22orf31O95567 290 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 INSRRP14616 1297 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 AFMP43652 599 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 POLGP54098 1239 aaPredicted RBP11.59□□□□□ -0.55
CDH3-210ENST00000569117 ADAM17P78536 824 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 TBC1D8BQ0IIM8 1120 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 DHX8Q14562 1220 aaKnown RBP11.59□□□□□ -0.55
CDH3-210ENST00000569117 EMC2Q15006 297 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 GRIK4Q16099 956 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 ARSHQ5FYA8 562 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 CAVIN1Q6NZI2 390 aaKnown RBP11.59□□□□□ -0.55
CDH3-210ENST00000569117 NFRKBQ6P4R8 1299 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 EXOC8Q8IYI6 725 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 GRAMD1CQ8IYS0 662 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 MCPH1Q8NEM0 835 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 SLC7A3Q8WY07 619 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 C7orf25Q9BPX7 421 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 SH2D3AQ9BRG2 576 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 REEP2Q9BRK0 252 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 ATP6V0A4Q9HBG4 840 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 TMEM63CQ9P1W3 806 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 GTF2IRD1Q9UHL9 959 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 ODF2LQ9ULJ1 636 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 TRIP12Q14669 1992 aaPredicted RBP11.59□□□□□ -0.55
CDH3-210ENST00000569117 GRIN2DO15399 1336 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 EVPLQ92817 2033 aa11.59□□□□□ -0.55
CDH3-210ENST00000569117 IGKV6-21A0A0C4DH24 114 aa11.58□□□□□ -0.56
CDH3-210ENST00000569117 A0A0U1RQG5 324 aaPredicted RBP11.58□□□□□ -0.56
CDH3-210ENST00000569117 FRMD3A2A2Y4 597 aa11.58□□□□□ -0.56
CDH3-210ENST00000569117 MBLAC1A4D2B0 266 aaPredicted RBP11.58□□□□□ -0.56
CDH3-210ENST00000569117 MAFO75444 373 aaPredicted RBP11.58□□□□□ -0.56
CDH3-210ENST00000569117 NUDT7P0C024 238 aa11.58□□□□□ -0.56
CDH3-210ENST00000569117 PTPN11Q06124 597 aaPredicted RBP11.58□□□□□ -0.56
CDH3-210ENST00000569117 DPYDQ12882 1025 aa11.58□□□□□ -0.56
CDH3-210ENST00000569117 CUL4BQ13620 913 aa11.58□□□□□ -0.56
CDH3-210ENST00000569117 NBPF20Q3BBV1 942 aa11.58□□□□□ -0.56
CDH3-210ENST00000569117 MARCH8Q5T0T0 291 aa11.58□□□□□ -0.56
CDH3-210ENST00000569117 RBM43Q6ZSC3 357 aaKnown RBP11.58□□□□□ -0.56
CDH3-210ENST00000569117 C7orf31Q8N865 590 aa11.58□□□□□ -0.56
CDH3-210ENST00000569117 SPATA20Q8TB22 786 aa11.58□□□□□ -0.56
CDH3-210ENST00000569117 TRAPPC12Q8WVT3 735 aa11.58□□□□□ -0.56
CDH3-210ENST00000569117 STAMQ92783 540 aa11.58□□□□□ -0.56
CDH3-210ENST00000569117 DNAJC19Q96DA6 116 aa11.58□□□□□ -0.56
CDH3-210ENST00000569117 JPH2Q9BR39 696 aaPredicted RBP11.58□□□□□ -0.56
CDH3-210ENST00000569117 SEZ6LQ9BYH1 1024 aa11.58□□□□□ -0.56
CDH3-210ENST00000569117 XPNPEP1Q9NQW7 623 aa11.58□□□□□ -0.56
CDH3-210ENST00000569117 STARD7Q9NQZ5 370 aa11.58□□□□□ -0.56
CDH3-210ENST00000569117 PDLIM7Q9NR12 457 aa11.58□□□□□ -0.56
CDH3-210ENST00000569117 HDAC6Q9UBN7 1215 aa11.58□□□□□ -0.56
CDH3-210ENST00000569117 TUBE1Q9UJT0 475 aa11.58□□□□□ -0.56
CDH3-210ENST00000569117 TANC1Q9C0D5 1861 aa11.57□□□□□ -0.56
CDH3-210ENST00000569117 C17orf102A2RUQ5 167 aa11.57□□□□□ -0.56
CDH3-210ENST00000569117 MAGEB2O15479 319 aa11.57□□□□□ -0.56
CDH3-210ENST00000569117 TFRCP02786 760 aaKnown RBP11.57□□□□□ -0.56
CDH3-210ENST00000569117 KRT18P05783 430 aaKnown RBP11.57□□□□□ -0.56
CDH3-210ENST00000569117 GNAT1P11488 350 aa11.57□□□□□ -0.56
CDH3-210ENST00000569117 COL6A1P12109 1028 aa11.57□□□□□ -0.56
CDH3-210ENST00000569117 CASP1P29466 404 aa11.57□□□□□ -0.56
CDH3-210ENST00000569117 ZNF131P52739 623 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms