RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 YWHABP31946 246 aaKnown RBP22.72■■□□□ 1.23
CLK3-225ENST00000569063 BMPR1AP36894 532 aa22.72■■□□□ 1.23
CLK3-225ENST00000569063 TXKP42681 527 aa22.72■■□□□ 1.23
CLK3-225ENST00000569063 NPEPPSP55786 919 aa22.72■■□□□ 1.23
CLK3-225ENST00000569063 FAM189BP81408 668 aa22.72■■□□□ 1.23
CLK3-225ENST00000569063 OTUD6AQ7L8S5 288 aa22.72■■□□□ 1.23
CLK3-225ENST00000569063 ZNF579Q8NAF0 562 aaKnown RBP22.72■■□□□ 1.23
CLK3-225ENST00000569063 NLRP7Q8WX94 980 aa22.72■■□□□ 1.23
CLK3-225ENST00000569063 ZNF668Q96K58 619 aaPredicted RBP22.72■■□□□ 1.23
CLK3-225ENST00000569063 CEP170P1Q96L14 293 aa22.72■■□□□ 1.23
CLK3-225ENST00000569063 TBC1D32Q96NH3 1257 aa22.72■■□□□ 1.23
CLK3-225ENST00000569063 HSD17B14Q9BPX1 270 aa22.72■■□□□ 1.23
CLK3-225ENST00000569063 COL25A1Q9BXS0 654 aaPredicted RBP22.72■■□□□ 1.23
CLK3-225ENST00000569063 SUCLA2Q9P2R7 463 aaPredicted RBP22.72■■□□□ 1.23
CLK3-225ENST00000569063 RALGAPA2Q2PPJ7 1873 aa22.71■■□□□ 1.23
CLK3-225ENST00000569063 MCM7P33993 719 aa22.71■■□□□ 1.23
CLK3-225ENST00000569063 RFC5P40937 340 aa22.71■■□□□ 1.23
CLK3-225ENST00000569063 CYP4A11Q02928 519 aa22.71■■□□□ 1.23
CLK3-225ENST00000569063 ORC2Q13416 577 aaPredicted RBP22.71■■□□□ 1.23
CLK3-225ENST00000569063 GPM6BQ13491 265 aa22.71■■□□□ 1.23
CLK3-225ENST00000569063 CTTNQ14247 550 aaKnown RBP22.71■■□□□ 1.23
CLK3-225ENST00000569063 NOSTRINQ8IVI9 506 aa22.71■■□□□ 1.23
CLK3-225ENST00000569063 NEK9Q8TD19 979 aa22.71■■□□□ 1.23
CLK3-225ENST00000569063 SLC7A3Q8WY07 619 aa22.71■■□□□ 1.23
CLK3-225ENST00000569063 MRPL38Q96DV4 380 aaKnown RBP22.71■■□□□ 1.23
CLK3-225ENST00000569063 SCLT1Q96NL6 688 aa22.71■■□□□ 1.23
CLK3-225ENST00000569063 EIF2AK1Q9BQI3 630 aaKnown RBP22.71■■□□□ 1.23
CLK3-225ENST00000569063 GCOM2Q9BZD3 368 aaPredicted RBP22.71■■□□□ 1.23
CLK3-225ENST00000569063 TMEM60Q9H2L4 133 aa22.71■■□□□ 1.23
CLK3-225ENST00000569063 DHX33Q9H6R0 707 aaKnown RBP22.71■■□□□ 1.23
CLK3-225ENST00000569063 ELAC1Q9H777 363 aaKnown RBP22.71■■□□□ 1.23
CLK3-225ENST00000569063 PRRC2BQ5JSZ5 2229 aaKnown RBP22.7■■□□□ 1.23
CLK3-225ENST00000569063 LYPLA2O95372 231 aa22.7■■□□□ 1.22
CLK3-225ENST00000569063 ATP2B1P20020 1258 aa22.7■■□□□ 1.22
CLK3-225ENST00000569063 CTNNB1P35222 781 aa22.7■■□□□ 1.22
CLK3-225ENST00000569063 MRPS5P82675 430 aaKnown RBP22.7■■□□□ 1.22
CLK3-225ENST00000569063 SKIV2LQ15477 1246 aaKnown RBP22.7■■□□□ 1.22
CLK3-225ENST00000569063 PTPROQ16827 1216 aa22.7■■□□□ 1.22
CLK3-225ENST00000569063 TJAP1Q5JTD0 557 aa22.7■■□□□ 1.22
CLK3-225ENST00000569063 ZNF410Q86VK4 478 aa22.7■■□□□ 1.22
CLK3-225ENST00000569063 TPH2Q8IWU9 490 aa22.7■■□□□ 1.22
CLK3-225ENST00000569063 TMX3Q96JJ7 454 aa22.7■■□□□ 1.22
CLK3-225ENST00000569063 ASB2Q96Q27 587 aa22.7■■□□□ 1.22
CLK3-225ENST00000569063 PLVAPQ9BX97 442 aa22.7■■□□□ 1.22
CLK3-225ENST00000569063 NLRC5Q86WI3 1866 aa22.69■■□□□ 1.22
CLK3-225ENST00000569063 CD2BP2O95400 341 aaKnown RBP22.69■■□□□ 1.22
CLK3-225ENST00000569063 ZSCAN20P17040 1043 aaPredicted RBP22.69■■□□□ 1.22
CLK3-225ENST00000569063 U2AF2P26368 475 aaKnown RBP eCLIP22.69■■□□□ 1.223e-6■■□□□ 13
CLK3-225ENST00000569063 TRAPPC10P48553 1259 aa22.69■■□□□ 1.22
CLK3-225ENST00000569063 MCM2P49736 904 aa22.69■■□□□ 1.22
CLK3-225ENST00000569063 POLGP54098 1239 aaPredicted RBP22.69■■□□□ 1.22
CLK3-225ENST00000569063 RHPN2Q8IUC4 686 aa22.69■■□□□ 1.22
CLK3-225ENST00000569063 SYMPKQ92797 1274 aaKnown RBP22.69■■□□□ 1.22
CLK3-225ENST00000569063 C11orf84Q9BUA3 381 aaPredicted RBP22.69■■□□□ 1.22
CLK3-225ENST00000569063 TMEM161AQ9NX61 479 aa22.69■■□□□ 1.22
CLK3-225ENST00000569063 MRPL42Q9Y6G3 142 aaKnown RBP22.69■■□□□ 1.22
CLK3-225ENST00000569063 A0A087WZ62 844 aa22.68■■□□□ 1.22
CLK3-225ENST00000569063 ZBTB39O15060 712 aa22.68■■□□□ 1.22
CLK3-225ENST00000569063 GAS2O43903 313 aaKnown RBP22.68■■□□□ 1.22
CLK3-225ENST00000569063 GNL2Q13823 731 aaKnown RBP22.68■■□□□ 1.22
CLK3-225ENST00000569063 FDXACB1Q9BRP7 624 aaPredicted RBP22.68■■□□□ 1.22
CLK3-225ENST00000569063 INO80BQ9C086 356 aaPredicted RBP22.68■■□□□ 1.22
CLK3-225ENST00000569063 COG5Q9UP83 839 aa22.68■■□□□ 1.22
CLK3-225ENST00000569063 KIF3AQ9Y496 699 aa22.68■■□□□ 1.22
CLK3-225ENST00000569063 GATMP50440 423 aa22.67■■□□□ 1.22
CLK3-225ENST00000569063 ZNF174Q15697 407 aa22.67■■□□□ 1.22
CLK3-225ENST00000569063 PAN2Q504Q3 1202 aaKnown RBP22.67■■□□□ 1.22
CLK3-225ENST00000569063 XKR9Q5GH70 373 aa22.67■■□□□ 1.22
CLK3-225ENST00000569063 TTC38Q5R3I4 469 aa22.67■■□□□ 1.22
CLK3-225ENST00000569063 FAM102BQ5T8I3 360 aa22.67■■□□□ 1.22
CLK3-225ENST00000569063 KSR1Q8IVT5 923 aa22.67■■□□□ 1.22
CLK3-225ENST00000569063 ATP6V0A4Q9HBG4 840 aa22.67■■□□□ 1.22
CLK3-225ENST00000569063 ANKEF1Q9NU02 776 aa22.67■■□□□ 1.22
CLK3-225ENST00000569063 COL4A3BPQ9Y5P4 624 aa22.67■■□□□ 1.22
CLK3-225ENST00000569063 XIRP2A4UGR9 3374 aa22.67■■□□□ 1.22
CLK3-225ENST00000569063 POTEMA6NI47 508 aa22.66■■□□□ 1.22
CLK3-225ENST00000569063 CSDE1O75534 798 aaKnown RBP22.66■■□□□ 1.22
CLK3-225ENST00000569063 IBSPP21815 317 aaPredicted RBP22.66■■□□□ 1.22
CLK3-225ENST00000569063 FGFR4P22455 802 aa22.66■■□□□ 1.22
CLK3-225ENST00000569063 AAK1Q2M2I8 961 aa22.66■■□□□ 1.22
CLK3-225ENST00000569063 NAALADL2Q58DX5 795 aa22.66■■□□□ 1.22
CLK3-225ENST00000569063 TCP11Q8WWU5 503 aa22.66■■□□□ 1.22
CLK3-225ENST00000569063 PRPF31Q8WWY3 499 aaKnown RBP22.66■■□□□ 1.22
CLK3-225ENST00000569063 PSPC1Q8WXF1 523 aaKnown RBP22.66■■□□□ 1.22
CLK3-225ENST00000569063 P2RX5Q93086 422 aa22.66■■□□□ 1.22
CLK3-225ENST00000569063 HLA-CQ95604 372 aa22.66■■□□□ 1.22
CLK3-225ENST00000569063 TMEM143Q96AN5 459 aa22.66■■□□□ 1.22
CLK3-225ENST00000569063 LMAN2LQ9H0V9 348 aa22.66■■□□□ 1.22
CLK3-225ENST00000569063 IFT122Q9HBG6 1241 aa22.66■■□□□ 1.22
CLK3-225ENST00000569063 CHST12Q9NRB3 414 aa22.66■■□□□ 1.22
CLK3-225ENST00000569063 NOL7Q9UMY1 257 aaKnown RBP22.66■■□□□ 1.22
CLK3-225ENST00000569063 VCANP13611 3396 aa22.65■■□□□ 1.22
CLK3-225ENST00000569063 A0A0U1RQF3 1178 aa22.65■■□□□ 1.22
CLK3-225ENST00000569063 OR52Z1P0C646 297 aa22.65■■□□□ 1.22
CLK3-225ENST00000569063 XRCC6P12956 609 aaKnown RBP eCLIP22.65■■□□□ 1.22
CLK3-225ENST00000569063 SFPQP23246 707 aaKnown RBP eCLIP22.65■■□□□ 1.22
CLK3-225ENST00000569063 TECP42680 631 aa22.65■■□□□ 1.22
CLK3-225ENST00000569063 EMC2Q15006 297 aa22.65■■□□□ 1.22
CLK3-225ENST00000569063 TIGD5Q53EQ6 642 aa22.65■■□□□ 1.22
CLK3-225ENST00000569063 ECHDC2Q86YB7 292 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms