RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 SNUPNO95149 360 aaKnown RBP3.51□□□□□ -1.85
VPS35-209ENST00000568642 DDX58O95786 925 aaKnown RBP3.51□□□□□ -1.85
VPS35-209ENST00000568642 CYP11A1P05108 521 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 ITGAVP06756 1048 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 CKMT1AP12532 417 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 CES1P23141 567 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 PPM1AP35813 382 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 GPR3P46089 330 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 PRIM2P49643 509 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 MECP2P51608 486 aaKnown RBP3.51□□□□□ -1.85
VPS35-209ENST00000568642 CASP5P51878 434 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 NEK4P51957 841 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 SUMO1P63165 101 aaKnown RBP3.51□□□□□ -1.85
VPS35-209ENST00000568642 RPL6Q02878 288 aaKnown RBP3.51□□□□□ -1.85
VPS35-209ENST00000568642 CACNB2Q08289 660 aaPredicted RBP3.51□□□□□ -1.85
VPS35-209ENST00000568642 LLGL1Q15334 1064 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 CHRNA2Q15822 529 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 SLC14A2Q15849 920 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 TRAPPC3LQ5T215 181 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 CDCP2Q5VXM1 449 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 CIAPIN1Q6FI81 312 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 OVOS1Q6IE37 1185 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 ZCCHC8Q6NZY4 707 aaKnown RBP3.51□□□□□ -1.85
VPS35-209ENST00000568642 LILRA6Q6PI73 481 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 PRR23CQ6ZRP0 262 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 PDZD4Q76G19 769 aaPredicted RBP3.51□□□□□ -1.85
VPS35-209ENST00000568642 SRGAP1Q7Z6B7 1085 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 PDZD3Q86UT5 571 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 ZNF227Q86WZ6 799 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 PTRH1Q86Y79 214 aaKnown RBP3.51□□□□□ -1.85
VPS35-209ENST00000568642 MAP4K3Q8IVH8 894 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 NRSN1Q8IZ57 195 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 SPATA5Q8NB90 893 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 DIS3LQ8TF46 1054 aaKnown RBP3.51□□□□□ -1.85
VPS35-209ENST00000568642 ASB12Q8WXK4 309 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 DIO2Q92813 273 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 USP7Q93009 1102 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 C1orf159Q96HA4 380 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 TNIP3Q96KP6 325 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 MRGPRX3Q96LB0 322 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 RIPOR3Q96MK2 946 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 FAM193BQ96PV7 902 aaPredicted RBP3.51□□□□□ -1.85
VPS35-209ENST00000568642 PPP1R16BQ96T49 567 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 KRTAP9-3Q9BYQ3 159 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 GTPBP4Q9BZE4 634 aaKnown RBP3.51□□□□□ -1.85
VPS35-209ENST00000568642 BHLHE41Q9C0J9 482 aaPredicted RBP3.51□□□□□ -1.85
VPS35-209ENST00000568642 MIR1-1HGQ9H1L0 117 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 VPS45Q9NRW7 570 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 ATP8A2Q9NTI2 1148 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 SPTLC3Q9NUV7 552 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 STAP2Q9UGK3 403 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 SERPINB13Q9UIV8 391 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 CDC23Q9UJX2 597 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 ODF2LQ9ULJ1 636 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 L1RE1Q9UN81 338 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 PCDHGB6Q9Y5F9 930 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 ZFHX4Q86UP3 3567 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 CFAP54Q96N23 3096 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 LAMB2P55268 1798 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 ADAMTSL1Q8N6G6 1762 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 GPRASP1Q5JY77 1395 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 MAP1BP46821 2468 aaKnown RBP3.5□□□□□ -1.85
VPS35-209ENST00000568642 C5P01031 1676 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 CCDC141Q6ZP82 1450 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 CFAP47Q6ZTR5 3102 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 TAF1LQ8IZX4 1826 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 RRN3P2A6NIE6 340 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 ARNTLO00327 626 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 PRODHO43272 600 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 AHCYL1O43865 530 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 XYLBO75191 536 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 GLRX3O76003 335 aaKnown RBP3.5□□□□□ -1.85
VPS35-209ENST00000568642 HTR3BO95264 441 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 FKBP9O95302 570 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 EOMESO95936 686 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 ADRB2P07550 413 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 PYGMP11217 842 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 MTHFD1P11586 935 aaKnown RBP3.5□□□□□ -1.85
VPS35-209ENST00000568642 ATP1A3P13637 1013 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 GYS1P13807 737 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 FSTP19883 344 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 ABCB4P21439 1286 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 RPS6KB1P23443 525 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 AKAP5P24588 427 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 PDIA3P30101 505 aaKnown RBP3.5□□□□□ -1.85
VPS35-209ENST00000568642 ATICP31939 592 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 IGFALSP35858 605 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 FLT3P36888 993 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 NR1H2P55055 460 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 TYRO3Q06418 890 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 SF1Q15637 639 aaKnown RBP3.5□□□□□ -1.85
VPS35-209ENST00000568642 RPS26P11Q5JNZ5 115 aaPredicted RBP3.5□□□□□ -1.85
VPS35-209ENST00000568642 GNASQ5JWF2 1037 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 DENND5AQ6IQ26 1287 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 FKBP9P1Q75LS8 142 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 CATIPQ7Z7H3 387 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 SYT9Q86SS6 491 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 NLRP13Q86W25 1043 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 NCAPG2Q86XI2 1143 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 LMNTD2Q8IXW0 634 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms