RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 LZTS1Q9Y250 596 aa12.81□□□□□ -0.36
CLN3-226ENST00000567160 FNDC1Q4ZHG4 1894 aaPredicted RBP12.8□□□□□ -0.36
CLN3-226ENST00000567160 FSCN2O14926 492 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 SYT1P21579 422 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 MTHFRP42898 656 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 ERVFC1P60507 584 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 MRPS6P82932 125 aaKnown RBP12.8□□□□□ -0.36
CLN3-226ENST00000567160 PPFIA1Q13136 1202 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 PAK2Q13177 524 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 UBE2SQ16763 222 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 PLPP4Q5VZY2 271 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 ZC3H14Q6PJT7 736 aaKnown RBP12.8□□□□□ -0.36
CLN3-226ENST00000567160 CYFIP1Q7L576 1253 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 ZDHHC14Q8IZN3 488 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 DTWD2Q8NBA8 298 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 FBXO18Q8NFZ0 1043 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 IL31RAQ8NI17 732 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 DNAJB3Q8WWF6 145 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 CUL5Q93034 780 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 ADAM7Q9H2U9 754 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 POMKQ9H5K3 350 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 NGRNQ9NPE2 291 aaKnown RBP12.8□□□□□ -0.36
CLN3-226ENST00000567160 RIC8AQ9NPQ8 531 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 ENTPD7Q9NQZ7 604 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 DLL3Q9NYJ7 618 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 PCDHB7Q9Y5E2 793 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 LOXHD1Q8IVV2 1947 aa12.8□□□□□ -0.36
CLN3-226ENST00000567160 ESYT2A0FGR8 921 aa12.79□□□□□ -0.36
CLN3-226ENST00000567160 GCOM1H8Y6P7 765 aaPredicted RBP12.79□□□□□ -0.36
CLN3-226ENST00000567160 FIBPO43427 364 aa12.79□□□□□ -0.36
CLN3-226ENST00000567160 STX6O43752 255 aa12.79□□□□□ -0.36
CLN3-226ENST00000567160 POLR2MP0CAP2 368 aa12.79□□□□□ -0.36
CLN3-226ENST00000567160 GNA11P29992 359 aa12.79□□□□□ -0.36
CLN3-226ENST00000567160 HOXA13P31271 388 aaPredicted RBP12.79□□□□□ -0.36
CLN3-226ENST00000567160 KRT2P35908 639 aa12.79□□□□□ -0.36
CLN3-226ENST00000567160 SAFBQ15424 915 aaKnown RBP eCLIP12.79□□□□□ -0.36
CLN3-226ENST00000567160 FOXD4L5Q5VV16 416 aaPredicted RBP12.79□□□□□ -0.36
CLN3-226ENST00000567160 CWF19L1Q69YN2 538 aaKnown RBP12.79□□□□□ -0.36
CLN3-226ENST00000567160 MCTP1Q6DN14 999 aa12.79□□□□□ -0.36
CLN3-226ENST00000567160 USP17L6PQ6QN14 398 aa12.79□□□□□ -0.36
CLN3-226ENST00000567160 RTN4RL1Q86UN2 441 aaPredicted RBP12.79□□□□□ -0.36
CLN3-226ENST00000567160 BLIDQ8IZY5 108 aa12.79□□□□□ -0.36
CLN3-226ENST00000567160 CYP2W1Q8TAV3 490 aa12.79□□□□□ -0.36
CLN3-226ENST00000567160 OXER1Q8TDS5 423 aa12.79□□□□□ -0.36
CLN3-226ENST00000567160 FOXD4L4Q8WXT5 416 aaPredicted RBP12.79□□□□□ -0.36
CLN3-226ENST00000567160 TCF25Q9BQ70 676 aa12.79□□□□□ -0.36
CLN3-226ENST00000567160 ZMYND12Q9H0C1 365 aa12.79□□□□□ -0.36
CLN3-226ENST00000567160 SMOC2Q9H3U7 446 aa12.79□□□□□ -0.36
CLN3-226ENST00000567160 AGO3Q9H9G7 860 aaKnown RBP12.79□□□□□ -0.36
CLN3-226ENST00000567160 PCDHA4Q9UN74 947 aa12.79□□□□□ -0.36
CLN3-226ENST00000567160 MBLAC1A4D2B0 266 aaPredicted RBP12.78□□□□□ -0.36
CLN3-226ENST00000567160 TBKBP1A7MCY6 615 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 ASGR2P07307 311 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 LAG3P18627 525 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 SDHBP21912 280 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 SARSP49591 514 aaKnown RBP12.78□□□□□ -0.36
CLN3-226ENST00000567160 GNL2Q13823 731 aaKnown RBP12.78□□□□□ -0.36
CLN3-226ENST00000567160 PKP1Q13835 747 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 NPY5RQ15761 445 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 GRIK4Q16099 956 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 JAKMIP3Q5VZ66 844 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 FCHSD1Q86WN1 690 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 DIS3L2Q8IYB7 885 aaKnown RBP12.78□□□□□ -0.36
CLN3-226ENST00000567160 FAM177A1Q8N128 213 aaPredicted RBP12.78□□□□□ -0.36
CLN3-226ENST00000567160 REXO1Q8N1G1 1221 aaKnown RBP12.78□□□□□ -0.36
CLN3-226ENST00000567160 COLGALT1Q8NBJ5 622 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 GIMAP8Q8ND71 665 aaPredicted RBP12.78□□□□□ -0.36
CLN3-226ENST00000567160 BICD2Q8TD16 824 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 MRPS27Q92552 414 aaKnown RBP12.78□□□□□ -0.36
CLN3-226ENST00000567160 RUBCNQ92622 972 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 PGBD1Q96JS3 809 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 BRMS1Q9HCU9 246 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 ERAP1Q9NZ08 941 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 LIMD1Q9UGP4 676 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 FBXL21Q9UKT6 434 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 PADI3Q9ULW8 664 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 MTMR6Q9Y217 621 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 USTQ9Y2C2 406 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 TRPV2Q9Y5S1 764 aa12.78□□□□□ -0.36
CLN3-226ENST00000567160 OTOGLQ3ZCN5 2332 aa12.77□□□□□ -0.36
CLN3-226ENST00000567160 BTBD18B2RXH4 712 aa12.77□□□□□ -0.37
CLN3-226ENST00000567160 SPATA31C2B4DYI2 1134 aa12.77□□□□□ -0.37
CLN3-226ENST00000567160 MEIS2O14770 477 aa12.77□□□□□ -0.37
CLN3-226ENST00000567160 IBSPP21815 317 aaPredicted RBP12.77□□□□□ -0.37
CLN3-226ENST00000567160 GATMP50440 423 aa12.77□□□□□ -0.37
CLN3-226ENST00000567160 PLCB3Q01970 1234 aa12.77□□□□□ -0.37
CLN3-226ENST00000567160 SP4Q02446 784 aa12.77□□□□□ -0.37
CLN3-226ENST00000567160 KRT17Q04695 432 aa12.77□□□□□ -0.37
CLN3-226ENST00000567160 NR5A1Q13285 461 aa12.77□□□□□ -0.37
CLN3-226ENST00000567160 GALNT17Q6IS24 598 aa12.77□□□□□ -0.37
CLN3-226ENST00000567160 FERMT3Q86UX7 667 aa12.77□□□□□ -0.37
CLN3-226ENST00000567160 DAGLBQ8NCG7 672 aa12.77□□□□□ -0.37
CLN3-226ENST00000567160 ZFP91Q96JP5 570 aaPredicted RBP12.77□□□□□ -0.37
CLN3-226ENST00000567160 INPP4AQ96PE3 977 aaPredicted RBP12.77□□□□□ -0.37
CLN3-226ENST00000567160 SENP7Q9BQF6 1050 aa12.77□□□□□ -0.37
CLN3-226ENST00000567160 GLT8D2Q9H1C3 349 aa12.77□□□□□ -0.37
CLN3-226ENST00000567160 BCAS3Q9H6U6 928 aa12.77□□□□□ -0.37
CLN3-226ENST00000567160 DBR1Q9UK59 544 aaKnown RBP12.77□□□□□ -0.37
CLN3-226ENST00000567160 PCDHA6Q9UN73 950 aa12.77□□□□□ -0.37
CLN3-226ENST00000567160 PCDHA8Q9Y5H6 950 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms