RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 TMEM60Q9H2L4 133 aa14.98□□□□□ -0.01
CLK3-218ENST00000566926 RGL1Q9NZL6 768 aa14.98□□□□□ -0.01
CLK3-218ENST00000566926 STK24Q9Y6E0 443 aa14.98□□□□□ -0.01
CLK3-218ENST00000566926 PRPF40AO75400 957 aaKnown RBP14.97□□□□□ -0.01
CLK3-218ENST00000566926 UPP2O95045 317 aa14.97□□□□□ -0.01
CLK3-218ENST00000566926 STAG3L1P0CL83 205 aa14.97□□□□□ -0.01
CLK3-218ENST00000566926 XRCC6P12956 609 aaKnown RBP eCLIP14.97□□□□□ -0.01
CLK3-218ENST00000566926 POLGP54098 1239 aaPredicted RBP14.97□□□□□ -0.01
CLK3-218ENST00000566926 HTRA4P83105 476 aaPredicted RBP14.97□□□□□ -0.01
CLK3-218ENST00000566926 CYP4A11Q02928 519 aa14.97□□□□□ -0.01
CLK3-218ENST00000566926 TAP1Q03518 808 aa14.97□□□□□ -0.01
CLK3-218ENST00000566926 CTTNQ14247 550 aaKnown RBP14.97□□□□□ -0.01
CLK3-218ENST00000566926 FOXD4L6Q3SYB3 417 aaPredicted RBP14.97□□□□□ -0.01
CLK3-218ENST00000566926 FOXD4L3Q6VB84 417 aaPredicted RBP14.97□□□□□ -0.01
CLK3-218ENST00000566926 TMCO2Q7Z6W1 182 aaPredicted RBP14.97□□□□□ -0.01
CLK3-218ENST00000566926 LEO1Q8WVC0 666 aaPredicted RBP14.97□□□□□ -0.01
CLK3-218ENST00000566926 TCP11Q8WWU5 503 aa14.97□□□□□ -0.01
CLK3-218ENST00000566926 CCDC43Q96MW1 224 aaKnown RBP14.97□□□□□ -0.01
CLK3-218ENST00000566926 CEP89Q96ST8 783 aa14.97□□□□□ -0.01
CLK3-218ENST00000566926 OSMRQ99650 979 aa14.97□□□□□ -0.01
CLK3-218ENST00000566926 HSD17B14Q9BPX1 270 aa14.97□□□□□ -0.01
CLK3-218ENST00000566926 GCOM2Q9BZD3 368 aaPredicted RBP14.97□□□□□ -0.01
CLK3-218ENST00000566926 INO80BQ9C086 356 aaPredicted RBP14.97□□□□□ -0.01
CLK3-218ENST00000566926 PRDM12Q9H4Q4 367 aa14.97□□□□□ -0.01
CLK3-218ENST00000566926 CDHR5Q9HBB8 845 aa14.97□□□□□ -0.01
CLK3-218ENST00000566926 ERVK-5Q9HDB9 667 aa14.97□□□□□ -0.01
CLK3-218ENST00000566926 TUFT1Q9NNX1 390 aa14.97□□□□□ -0.01
CLK3-218ENST00000566926 ANKEF1Q9NU02 776 aa14.97□□□□□ -0.01
CLK3-218ENST00000566926 LMBRD1Q9NUN5 540 aa14.97□□□□□ -0.01
CLK3-218ENST00000566926 RCOR1Q9UKL0 485 aa14.97□□□□□ -0.01
CLK3-218ENST00000566926 NOC2LQ9Y3T9 749 aaKnown RBP14.97□□□□□ -0.01
CLK3-218ENST00000566926 DENND3A2RUS2 1198 aa14.96□□□□□ -0.01
CLK3-218ENST00000566926 GOLGA6L4A6NEF3 574 aa14.96□□□□□ -0.01
CLK3-218ENST00000566926 MUTP22033 750 aa14.96□□□□□ -0.01
CLK3-218ENST00000566926 EIF4BP23588 611 aaKnown RBP14.96□□□□□ -0.01
CLK3-218ENST00000566926 TECP42680 631 aa14.96□□□□□ -0.01
CLK3-218ENST00000566926 GPC3P51654 580 aa14.96□□□□□ -0.01
CLK3-218ENST00000566926 KLHL40Q2TBA0 621 aa14.96□□□□□ -0.01
CLK3-218ENST00000566926 XKR9Q5GH70 373 aa14.96□□□□□ -0.01
CLK3-218ENST00000566926 HAUS3Q68CZ6 603 aa14.96□□□□□ -0.01
CLK3-218ENST00000566926 PLA2G4FQ68DD2 849 aa14.96□□□□□ -0.01
CLK3-218ENST00000566926 ZNF410Q86VK4 478 aa14.96□□□□□ -0.01
CLK3-218ENST00000566926 NLRP7Q8WX94 980 aa14.96□□□□□ -0.01
CLK3-218ENST00000566926 SAMD11Q96NU1 681 aa14.96□□□□□ -0.01
CLK3-218ENST00000566926 TGS1Q96RS0 853 aaKnown RBP14.96□□□□□ -0.01
CLK3-218ENST00000566926 USP28Q96RU2 1077 aa14.96□□□□□ -0.01
CLK3-218ENST00000566926 PPP1R16BQ96T49 567 aa14.96□□□□□ -0.01
CLK3-218ENST00000566926 TSPYL2Q9H2G4 693 aaPredicted RBP14.96□□□□□ -0.01
CLK3-218ENST00000566926 ADAMTS10Q9H324 1103 aa14.96□□□□□ -0.01
CLK3-218ENST00000566926 C1orf112Q9NSG2 853 aa14.96□□□□□ -0.01
CLK3-218ENST00000566926 SUCLA2Q9P2R7 463 aaPredicted RBP14.96□□□□□ -0.01
CLK3-218ENST00000566926 WRAP73Q9P2S5 460 aaPredicted RBP14.96□□□□□ -0.01
CLK3-218ENST00000566926 ST3GAL5Q9UNP4 418 aa14.96□□□□□ -0.01
CLK3-218ENST00000566926 TMEM150BA6NC51 233 aa14.95□□□□□ -0.02
CLK3-218ENST00000566926 POTEMA6NI47 508 aa14.95□□□□□ -0.02
CLK3-218ENST00000566926 ASAP2O43150 1006 aa14.95□□□□□ -0.02
CLK3-218ENST00000566926 PPP6R2O75170 966 aa14.95□□□□□ -0.02
CLK3-218ENST00000566926 ZSCAN20P17040 1043 aaPredicted RBP14.95□□□□□ -0.02
CLK3-218ENST00000566926 FXR2P51116 673 aaKnown RBP eCLIP14.95□□□□□ -0.02
CLK3-218ENST00000566926 NPEPPSP55786 919 aa14.95□□□□□ -0.02
CLK3-218ENST00000566926 PTGDRQ13258 359 aa14.95□□□□□ -0.02
CLK3-218ENST00000566926 PDIA5Q14554 519 aa14.95□□□□□ -0.02
CLK3-218ENST00000566926 STK38Q15208 465 aa14.95□□□□□ -0.02
CLK3-218ENST00000566926 SF3A1Q15459 793 aaKnown RBP14.95□□□□□ -0.02
CLK3-218ENST00000566926 FAM173BQ6P4H8 233 aa14.95□□□□□ -0.02
CLK3-218ENST00000566926 NPAS4Q8IUM7 802 aa14.95□□□□□ -0.02
CLK3-218ENST00000566926 SP7Q8TDD2 431 aaPredicted RBP14.95□□□□□ -0.02
CLK3-218ENST00000566926 TMEM40Q8WWA1 233 aa14.95□□□□□ -0.02
CLK3-218ENST00000566926 PSPC1Q8WXF1 523 aaKnown RBP14.95□□□□□ -0.02
CLK3-218ENST00000566926 SH2D3AQ9BRG2 576 aa14.95□□□□□ -0.02
CLK3-218ENST00000566926 POLR3CQ9BUI4 534 aaPredicted RBP14.95□□□□□ -0.02
CLK3-218ENST00000566926 DHX33Q9H6R0 707 aaKnown RBP14.95□□□□□ -0.02
CLK3-218ENST00000566926 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.95□□□□□ -0.02
CLK3-218ENST00000566926 COL4A6Q14031 1691 aa14.95□□□□□ -0.02
CLK3-218ENST00000566926 FNDC1Q4ZHG4 1894 aaPredicted RBP14.95□□□□□ -0.02
CLK3-218ENST00000566926 LINC01553A4QN01 128 aa14.94□□□□□ -0.02
CLK3-218ENST00000566926 GTPBP6O43824 516 aaPredicted RBP14.94□□□□□ -0.02
CLK3-218ENST00000566926 TRAK2O60296 914 aa14.94□□□□□ -0.02
CLK3-218ENST00000566926 DGAT1O75907 488 aa14.94□□□□□ -0.02
CLK3-218ENST00000566926 DARSP14868 501 aaKnown RBP14.94□□□□□ -0.02
CLK3-218ENST00000566926 RPA1P27694 616 aa14.94□□□□□ -0.02
CLK3-218ENST00000566926 PRPHP41219 470 aa14.94□□□□□ -0.02
CLK3-218ENST00000566926 TOB1P50616 345 aaPredicted RBP14.94□□□□□ -0.02
CLK3-218ENST00000566926 ERVK-21P61565 698 aa14.94□□□□□ -0.02
CLK3-218ENST00000566926 NBR1Q14596 966 aa14.94□□□□□ -0.02
CLK3-218ENST00000566926 SLC39A14Q15043 492 aa14.94□□□□□ -0.02
CLK3-218ENST00000566926 FAM228AQ86W67 206 aa14.94□□□□□ -0.02
CLK3-218ENST00000566926 RHPN2Q8IUC4 686 aa14.94□□□□□ -0.02
CLK3-218ENST00000566926 LINC00301Q8NCQ3 95 aa14.94□□□□□ -0.02
CLK3-218ENST00000566926 MAFAQ8NHW3 353 aaPredicted RBP14.94□□□□□ -0.02
CLK3-218ENST00000566926 ARNTL2Q8WYA1 636 aa14.94□□□□□ -0.02
CLK3-218ENST00000566926 SYAP1Q96A49 352 aaPredicted RBP14.94□□□□□ -0.02
CLK3-218ENST00000566926 NACC1Q96RE7 527 aa14.94□□□□□ -0.02
CLK3-218ENST00000566926 MTRQ99707 1265 aa14.94□□□□□ -0.02
CLK3-218ENST00000566926 RGS18Q9NS28 235 aa14.94□□□□□ -0.02
CLK3-218ENST00000566926 TFIP11Q9UBB9 837 aaKnown RBP14.94□□□□□ -0.02
CLK3-218ENST00000566926 LRFN2Q9ULH4 789 aa14.94□□□□□ -0.02
CLK3-218ENST00000566926 PCDHB6Q9Y5E3 794 aa14.94□□□□□ -0.02
CLK3-218ENST00000566926 PRRC2BQ5JSZ5 2229 aaKnown RBP14.93□□□□□ -0.02
CLK3-218ENST00000566926 LCHNA4D1U4 455 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms