RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 SNCAIPQ9Y6H5 919 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 PAPPA2Q9BXP8 1791 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 PLA2G4BP0C869 781 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 DNA2P51530 1060 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 ARID5AQ03989 594 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 RPS6KA1Q15418 735 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 IFI16Q16666 785 aaKnown RBP14.43□□□□□ -0.1
VPS4A-204ENST00000566354 NOL9Q5SY16 702 aaKnown RBP14.43□□□□□ -0.1
VPS4A-204ENST00000566354 NELFCDQ8IXH7 590 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 SH2D3CQ8N5H7 860 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 FAM133AQ8N9E0 248 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 ZNF280CQ8ND82 737 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 SCFD1Q8WVM8 642 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 WDR18Q9BV38 432 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 GANQ9H2C0 597 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 TBC1D7Q9P0N9 293 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 CETN3O15182 167 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 MYBP10242 640 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 TAL1P17542 331 aaPredicted RBP14.43□□□□□ -0.1
VPS4A-204ENST00000566354 GUCY2FP51841 1108 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 UBE2SQ16763 222 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 PBKQ96KB5 322 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 FGFBP2Q9BYJ0 223 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 RABEP2Q9H5N1 569 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 NMRK2Q9NPI5 230 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 KIAA1024Q9UPX6 916 aa14.43□□□□□ -0.1
VPS4A-204ENST00000566354 HMGB1P1B2RPK0 211 aaPredicted RBP14.42□□□□□ -0.1
VPS4A-204ENST00000566354 E9PMD0 336 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 NR1D1P20393 614 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 NF2P35240 595 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 HSPA9P38646 679 aaKnown RBP14.42□□□□□ -0.1
VPS4A-204ENST00000566354 LIG3P49916 1009 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 ATP1A2P50993 1020 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 BACE1P56817 501 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 KCNH2Q12809 1159 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 TTLL12Q14166 644 aaPredicted RBP14.42□□□□□ -0.1
VPS4A-204ENST00000566354 SUGP1Q8IWZ8 645 aaKnown RBP14.42□□□□□ -0.1
VPS4A-204ENST00000566354 ATP6V1G3Q96LB4 118 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 RNPC3Q96LT9 517 aaKnown RBP14.42□□□□□ -0.1
VPS4A-204ENST00000566354 PACSIN1Q9BY11 444 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 EPN3Q9H201 632 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 AS3MTQ9HBK9 375 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 PLCB1Q9NQ66 1216 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 PACSIN2Q9UNF0 486 aaPredicted RBP14.42□□□□□ -0.1
VPS4A-204ENST00000566354 RAD51CO43502 376 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 VCAM1P19320 739 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 LSP1P33241 339 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 MMS22LQ6ZRQ5 1243 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 GPBP1Q86WP2 473 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 CLMNQ96JQ2 1002 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 ISCUQ9H1K1 167 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 PSTPIP2Q9H939 334 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 SAMM50Q9Y512 469 aa14.42□□□□□ -0.1
VPS4A-204ENST00000566354 FRMD3A2A2Y4 597 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 SRRM3A6NNA2 597 aaPredicted RBP14.41□□□□□ -0.1
VPS4A-204ENST00000566354 KCNK3O14649 394 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 IRF6O14896 467 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 CYP11B2P19099 503 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 USP11P51784 963 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 HMGCS2P54868 508 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 PTK2Q05397 1052 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 CUL1Q13616 776 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 IRF2BP2Q7Z5L9 587 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 LPAR1Q92633 364 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 PAGR1Q9BTK6 254 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 GLT8D2Q9H1C3 349 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 CSADQ9Y600 493 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 DCAF8L1A6NGE4 600 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 WDR46O15213 610 aaKnown RBP14.41□□□□□ -0.1
VPS4A-204ENST00000566354 PPP1R37O75864 691 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 KIF4AO95239 1232 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 IREB2P48200 963 aaKnown RBP14.41□□□□□ -0.1
VPS4A-204ENST00000566354 RNASE9P60153 205 aaKnown RBP14.41□□□□□ -0.1
VPS4A-204ENST00000566354 ENOX2Q16206 610 aaKnown RBP14.41□□□□□ -0.1
VPS4A-204ENST00000566354 USH1GQ495M9 461 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 LRIG3Q6UXM1 1119 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 MICALCLQ6ZW33 695 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 FRMD5Q7Z6J6 570 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 KLHL7Q8IXQ5 586 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 ACTRT1Q8TDG2 376 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 SCFD2Q8WU76 684 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 CHURC1Q8WUH1 139 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 GJA10Q969M2 543 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 CALR3Q96L12 384 aaKnown RBP14.41□□□□□ -0.1
VPS4A-204ENST00000566354 ZNF408Q9H9D4 720 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 ELP3Q9H9T3 547 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 AFG3L2Q9Y4W6 797 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 PCDHA1Q9Y5I3 950 aa14.41□□□□□ -0.1
VPS4A-204ENST00000566354 GOLGA6L10A6NI86 522 aa14.4□□□□□ -0.1
VPS4A-204ENST00000566354 KIAA0754O94854 1291 aa14.4□□□□□ -0.1
VPS4A-204ENST00000566354 KRT18P05783 430 aaKnown RBP14.4□□□□□ -0.1
VPS4A-204ENST00000566354 NR2F2P24468 414 aa14.4□□□□□ -0.1
VPS4A-204ENST00000566354 ANXA13P27216 316 aa14.4□□□□□ -0.1
VPS4A-204ENST00000566354 GUCY1A3Q02108 690 aa14.4□□□□□ -0.1
VPS4A-204ENST00000566354 SPAG5Q96R06 1193 aa14.4□□□□□ -0.1
VPS4A-204ENST00000566354 FEM1BQ9UK73 627 aa14.4□□□□□ -0.1
VPS4A-204ENST00000566354 PLAAQ9Y263 795 aa14.4□□□□□ -0.1
VPS4A-204ENST00000566354 MYH7BA7E2Y1 1941 aa14.4□□□□□ -0.1
VPS4A-204ENST00000566354 NPHP3-ACAD11A0A0J9YXS1 232 aa14.4□□□□□ -0.11
VPS4A-204ENST00000566354 POTEB3A0JP26 581 aa14.4□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms