RNA–Protein interactions for RNA: ENST00000564845.5

CHD9-213, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD9, Length 11,504 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-213ENST00000564845 TRIM31Q9BZY9 425 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 LRWD1Q9UFC0 647 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 MAGED2Q9UNF1 606 aaPredicted RBP3.64□□□□□ -1.83
CHD9-213ENST00000564845 MRFAP1Q9Y605 127 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 BCRP11274 1271 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 CA4P22748 312 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 IGFBP6P24592 240 aaPredicted RBP3.64□□□□□ -1.83
CHD9-213ENST00000564845 SSR1P43307 286 aaKnown RBP3.64□□□□□ -1.83
CHD9-213ENST00000564845 CNTN2Q02246 1040 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 UGCGQ16739 394 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 SLFN13Q68D06 897 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 NUDT18Q6ZVK8 323 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 WDR75Q8IWA0 830 aaKnown RBP3.64□□□□□ -1.83
CHD9-213ENST00000564845 MICALL1Q8N3F8 863 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 IGSF22Q8N9C0 903 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 DDX55Q8NHQ9 600 aaKnown RBP eCLIP3.64□□□□□ -1.833e-9■■■□□ 16.8
CHD9-213ENST00000564845 CCDC26Q8TAB7 109 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 GRK7Q8WTQ7 553 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 HAS1Q92839 578 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 SAAL1Q96ER3 474 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 ZNF512BQ96KM6 892 aaPredicted RBP3.64□□□□□ -1.83
CHD9-213ENST00000564845 LPIN3Q9BQK8 851 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 AS3MTQ9HBK9 375 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 NDE1Q9NXR1 346 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 ITGB1BP2Q9UKP3 347 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 SIPA1L1O43166 1804 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 CYP3A7-CYP3A51PA0A087WV96 503 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 GCNT3O95395 438 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 NDUFB10O96000 172 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 GYPCP04921 128 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 GRB10Q13322 594 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 TBC1D31Q96DN5 1066 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 WDR18Q9BV38 432 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 SEZ6LQ9BYH1 1024 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 IPO11Q9UI26 975 aaKnown RBP3.64□□□□□ -1.83
CHD9-213ENST00000564845 PCDHA12Q9UN75 941 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 ANGPTL3Q9Y5C1 460 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 SLC9A1P19634 815 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 KRT31Q15323 416 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 DLGAP5Q15398 846 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 PTPN14Q15678 1187 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 GNPTABQ3T906 1256 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 RILPL1Q5EBL4 403 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 CCDC125Q86Z20 511 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 RAB3IL1Q8TBN0 382 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 DYDC2Q96IM9 177 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 MAP3K20Q9NYL2 800 aaKnown RBP3.64□□□□□ -1.83
CHD9-213ENST00000564845 GGA3Q9NZ52 723 aa3.64□□□□□ -1.83
CHD9-213ENST00000564845 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.64□□□□□ -1.83
CHD9-213ENST00000564845 GREB1LQ9C091 1923 aaPredicted RBP3.64□□□□□ -1.83
CHD9-213ENST00000564845 TAF1LQ8IZX4 1826 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 TTC26A0AVF1 554 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 RPN1P04843 607 aaKnown RBP3.63□□□□□ -1.83
CHD9-213ENST00000564845 HPDP32754 393 aaPredicted RBP3.63□□□□□ -1.83
CHD9-213ENST00000564845 CATSPER3Q86XQ3 398 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 SLC35F6Q8N357 371 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 FAM133AQ8N9E0 248 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 PPP2R3CQ969Q6 453 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 CCDC127Q96BQ5 260 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 MASTLQ96GX5 879 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 VPS33BQ9H267 617 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 CXCL16Q9H2A7 254 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 SEMA6BQ9H3T3 888 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 C10orf88Q9H8K7 445 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 VCX3AQ9NNX9 186 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 BARHL2Q9NY43 387 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 ARPP21Q9UBL0 812 aaPredicted RBP3.63□□□□□ -1.83
CHD9-213ENST00000564845 CUBNO60494 3623 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 SMIM23A6NLE4 172 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 AMHR2Q16671 573 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 C16orf86Q6ZW13 317 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 ILDR2Q71H61 639 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 TC2NQ8N9U0 490 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 UBXN4Q92575 508 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 NR2E3Q9Y5X4 410 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 SPDYE3A6NKU9 549 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 RBM6P78332 1123 aaKnown RBP3.63□□□□□ -1.83
CHD9-213ENST00000564845 MORC3Q14149 939 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 DACT2Q5SW24 774 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 P3H4Q92791 437 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 LBHD1Q9BQE6 289 aaPredicted RBP3.63□□□□□ -1.83
CHD9-213ENST00000564845 TIPINQ9BVW5 301 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 PLSCR1O15162 318 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 PRPF3O43395 683 aaKnown RBP3.63□□□□□ -1.83
CHD9-213ENST00000564845 CMA1P23946 247 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 CYLC1P35663 651 aaPredicted RBP3.63□□□□□ -1.83
CHD9-213ENST00000564845 POLR2FP61218 127 aaKnown RBP3.63□□□□□ -1.83
CHD9-213ENST00000564845 MYL5Q02045 173 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 DPY19L2P1Q6NXN4 242 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 RSRC2Q7L4I2 434 aaKnown RBP3.63□□□□□ -1.83
CHD9-213ENST00000564845 DDX23Q9BUQ8 820 aaKnown RBP3.63□□□□□ -1.83
CHD9-213ENST00000564845 EIF2AQ9BY44 585 aaKnown RBP3.63□□□□□ -1.83
CHD9-213ENST00000564845 CCDC113Q9H0I3 377 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 PRDM4Q9UKN5 801 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 ATP8B3O60423 1300 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 KCNJ18B7U540 433 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 DAPK3O43293 454 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 PFDN1O60925 122 aa3.63□□□□□ -1.83
CHD9-213ENST00000564845 YBX3P16989 372 aaKnown RBP eCLIP3.63□□□□□ -1.83
CHD9-213ENST00000564845 PTPREP23469 700 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms