RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 CENPPQ6IPU0 288 aa11.23□□□□□ -0.61
SMG1-208ENST00000563448 TTI2Q6NXR4 508 aa11.23□□□□□ -0.61
SMG1-208ENST00000563448 SLAIN1Q8ND83 568 aa11.23□□□□□ -0.61
SMG1-208ENST00000563448 KIFAP3Q92845 792 aa11.23□□□□□ -0.61
SMG1-208ENST00000563448 TMEM143Q96AN5 459 aa11.23□□□□□ -0.61
SMG1-208ENST00000563448 DUSP9Q99956 384 aaKnown RBP11.23□□□□□ -0.61
SMG1-208ENST00000563448 STRA6Q9BX79 667 aa11.23□□□□□ -0.61
SMG1-208ENST00000563448 POLR3FQ9H1D9 316 aaPredicted RBP11.23□□□□□ -0.61
SMG1-208ENST00000563448 SAMSN1Q9NSI8 373 aaKnown RBP11.23□□□□□ -0.61
SMG1-208ENST00000563448 LARSQ9P2J5 1176 aaKnown RBP11.23□□□□□ -0.61
SMG1-208ENST00000563448 NFE2L3Q9Y4A8 694 aa11.23□□□□□ -0.61
SMG1-208ENST00000563448 COL1A2P08123 1366 aa11.22□□□□□ -0.61
SMG1-208ENST00000563448 ADAMTS4O75173 837 aa11.22□□□□□ -0.61
SMG1-208ENST00000563448 PPP1R37O75864 691 aa11.22□□□□□ -0.61
SMG1-208ENST00000563448 PGK1P00558 417 aa11.22□□□□□ -0.61
SMG1-208ENST00000563448 INHAP05111 366 aa11.22□□□□□ -0.61
SMG1-208ENST00000563448 C6orf222P0C671 652 aaPredicted RBP11.22□□□□□ -0.61
SMG1-208ENST00000563448 RARBP10826 455 aa11.22□□□□□ -0.61
SMG1-208ENST00000563448 GRK4P32298 578 aa11.22□□□□□ -0.61
SMG1-208ENST00000563448 ARL2P36404 184 aa11.22□□□□□ -0.61
SMG1-208ENST00000563448 NCKAP1LP55160 1127 aa11.22□□□□□ -0.61
SMG1-208ENST00000563448 RTP1P59025 263 aa11.22□□□□□ -0.61
SMG1-208ENST00000563448 TBC1D8BQ0IIM8 1120 aa11.22□□□□□ -0.61
SMG1-208ENST00000563448 MKRN4PQ13434 485 aaPredicted RBP11.22□□□□□ -0.61
SMG1-208ENST00000563448 BMT2Q1RMZ1 405 aa11.22□□□□□ -0.61
SMG1-208ENST00000563448 BRDTQ58F21 947 aaPredicted RBP11.22□□□□□ -0.61
SMG1-208ENST00000563448 NELFCDQ8IXH7 590 aa11.22□□□□□ -0.61
SMG1-208ENST00000563448 SLC7A3Q8WY07 619 aa11.22□□□□□ -0.61
SMG1-208ENST00000563448 KCTD10Q9H3F6 313 aa11.22□□□□□ -0.61
SMG1-208ENST00000563448 K7ENM7 598 aa11.21□□□□□ -0.61
SMG1-208ENST00000563448 HAS3O00219 553 aa11.21□□□□□ -0.61
SMG1-208ENST00000563448 EIF3DO15371 548 aaKnown RBP eCLIP11.21□□□□□ -0.611e-6■□□□□ 10.6
SMG1-208ENST00000563448 KIF20AO95235 890 aa11.21□□□□□ -0.61
SMG1-208ENST00000563448 NPTX2P47972 431 aa11.21□□□□□ -0.61
SMG1-208ENST00000563448 PSEN2P49810 448 aa11.21□□□□□ -0.61
SMG1-208ENST00000563448 IGBP1P78318 339 aa11.21□□□□□ -0.61
SMG1-208ENST00000563448 PURAQ00577 322 aaKnown RBP11.21□□□□□ -0.61
SMG1-208ENST00000563448 KCNA1Q09470 495 aa11.21□□□□□ -0.61
SMG1-208ENST00000563448 DRP2Q13474 957 aa11.21□□□□□ -0.61
SMG1-208ENST00000563448 ZCWPW2Q504Y3 356 aa11.21□□□□□ -0.61
SMG1-208ENST00000563448 KSR1Q8IVT5 923 aa11.21□□□□□ -0.61
SMG1-208ENST00000563448 ASAP3Q8TDY4 903 aa11.21□□□□□ -0.61
SMG1-208ENST00000563448 ZBTB10Q96DT7 871 aa11.21□□□□□ -0.61
SMG1-208ENST00000563448 C17orf75Q9HAS0 396 aa11.21□□□□□ -0.61
SMG1-208ENST00000563448 PTPN22Q9Y2R2 807 aa11.21□□□□□ -0.61
SMG1-208ENST00000563448 ZMYM2Q9UBW7 1377 aa11.21□□□□□ -0.61
SMG1-208ENST00000563448 BICDL2A1A5D9 508 aa11.21□□□□□ -0.62
SMG1-208ENST00000563448 SLC16A4O15374 487 aa11.21□□□□□ -0.62
SMG1-208ENST00000563448 C22orf31O95567 290 aa11.21□□□□□ -0.62
SMG1-208ENST00000563448 ZNF18P17022 549 aa11.21□□□□□ -0.62
SMG1-208ENST00000563448 GLRA2P23416 452 aa11.21□□□□□ -0.62
SMG1-208ENST00000563448 TPM4P67936 248 aa11.21□□□□□ -0.62
SMG1-208ENST00000563448 MFSD10Q14728 455 aa11.21□□□□□ -0.62
SMG1-208ENST00000563448 KIAA0753Q2KHM9 967 aa11.21□□□□□ -0.62
SMG1-208ENST00000563448 HSP90AA4PQ58FG1 418 aa11.21□□□□□ -0.62
SMG1-208ENST00000563448 GNASQ5JWF2 1037 aa11.21□□□□□ -0.62
SMG1-208ENST00000563448 HAUS6Q7Z4H7 955 aa11.21□□□□□ -0.62
SMG1-208ENST00000563448 EXOC8Q8IYI6 725 aa11.21□□□□□ -0.62
SMG1-208ENST00000563448 LRRC71Q8N4P6 559 aa11.21□□□□□ -0.62
SMG1-208ENST00000563448 KLHDC9Q8NEP7 349 aa11.21□□□□□ -0.62
SMG1-208ENST00000563448 PPP1R13LQ8WUF5 828 aa11.21□□□□□ -0.62
SMG1-208ENST00000563448 SPIRE2Q8WWL2 714 aa11.21□□□□□ -0.62
SMG1-208ENST00000563448 NTPCRQ9BSD7 190 aaKnown RBP11.21□□□□□ -0.62
SMG1-208ENST00000563448 ST6GALNAC4Q9H4F1 302 aa11.21□□□□□ -0.62
SMG1-208ENST00000563448 SUGCTQ9HAC7 445 aa11.21□□□□□ -0.62
SMG1-208ENST00000563448 XPNPEP3Q9NQH7 507 aa11.21□□□□□ -0.62
SMG1-208ENST00000563448 DDX20Q9UHI6 824 aaKnown RBP11.21□□□□□ -0.62
SMG1-208ENST00000563448 UBE4BO95155 1302 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 ADGRA3Q8IWK6 1321 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 CCDC169A6NNP5 214 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 GAS2O43903 313 aaKnown RBP11.2□□□□□ -0.62
SMG1-208ENST00000563448 ATP1A3P13637 1013 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 KLRC1P26715 233 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 GTF2BQ00403 316 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 PPFIA1Q13136 1202 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 DMP1Q13316 513 aaPredicted RBP11.2□□□□□ -0.62
SMG1-208ENST00000563448 GRIK4Q16099 956 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 TPD52L1Q16890 204 aaPredicted RBP11.2□□□□□ -0.62
SMG1-208ENST00000563448 KNOP1Q1ED39 458 aaKnown RBP11.2□□□□□ -0.62
SMG1-208ENST00000563448 MARCH8Q5T0T0 291 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 CDKAL1Q5VV42 579 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 IER5Q5VY09 327 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 EFCAB12Q6NXP0 572 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 MTHFD1LQ6UB35 978 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 LINC01465Q8N7H1 131 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 TCP11Q8WWU5 503 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 IFT74Q96LB3 600 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 KIFC3Q9BVG8 833 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 IKZF4Q9H2S9 585 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 SPC25Q9HBM1 224 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 KMT5AQ9NQR1 393 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 PCDHB13Q9Y5F0 798 aa11.2□□□□□ -0.62
SMG1-208ENST00000563448 TGFB1I1O43294 461 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 KPNA6O60684 536 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 SMIM10L2AP0DMW4 78 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 SMIM10L2BP0DMW5 78 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 SMTNP53814 917 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 CHMP4BP1P59074 171 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 PLCB2Q00722 1185 aa11.19□□□□□ -0.62
SMG1-208ENST00000563448 LRRC63Q05C16 580 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms