RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 KIAA1328Q86T90 577 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 NCAPG2Q86XI2 1143 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 MAP4K3Q8IVH8 894 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 RNF10Q8N5U6 811 aaKnown RBP8.23□□□□□ -1.09
VPS39-204ENST00000561818 CEP112Q8N8E3 955 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 FAM133AQ8N9E0 248 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 XXYLT1Q8NBI6 393 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 GPRC5AQ8NFJ5 357 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 TRIM58Q8NG06 486 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 MORC4Q8TE76 937 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 PIGOQ8TEQ8 1089 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 SMCR8Q8TEV9 937 aaPredicted RBP8.23□□□□□ -1.09
VPS39-204ENST00000561818 SEPT1Q8WYJ6 367 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 OPTNQ96CV9 577 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 PKNOX2Q96KN3 472 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 SPAG5Q96R06 1193 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 MMP19Q99542 508 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 RUSC1Q9BVN2 902 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 C2orf40Q9H1Z8 148 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 MMRN2Q9H8L6 949 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 L2HGDHQ9H9P8 463 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 VTA1Q9NP79 307 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 ZNF302Q9NR11 478 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 AGPAT3Q9NRZ7 376 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 ARGLU1Q9NWB6 273 aaPredicted RBP8.23□□□□□ -1.09
VPS39-204ENST00000561818 INTUQ9ULD6 942 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 SIK3Q9Y2K2 1263 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 MAFBQ9Y5Q3 323 aaPredicted RBP8.23□□□□□ -1.09
VPS39-204ENST00000561818 EPN1Q9Y6I3 576 aaPredicted RBP8.23□□□□□ -1.09
VPS39-204ENST00000561818 ADM5C9JUS6 153 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 NOP56O00567 594 aaKnown RBP8.22□□□□□ -1.09
VPS39-204ENST00000561818 ASAP2O43150 1006 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 CTIFO43310 598 aaKnown RBP8.22□□□□□ -1.09
VPS39-204ENST00000561818 EXOC3O60645 756 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 ZC3H11AO75152 810 aaKnown RBP eCLIP8.22□□□□□ -1.09
VPS39-204ENST00000561818 LCA5LO95447 670 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 FERP16591 822 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 MAPK4P31152 587 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 POLGP54098 1239 aaPredicted RBP8.22□□□□□ -1.09
VPS39-204ENST00000561818 INHBEP58166 350 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 MCCD1P59942 119 aaPredicted RBP8.22□□□□□ -1.09
VPS39-204ENST00000561818 ACTR2P61160 394 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 PSMC6P62333 389 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 CKAP4Q07065 602 aaKnown RBP8.22□□□□□ -1.09
VPS39-204ENST00000561818 KCNH2Q12809 1159 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 BFSP1Q12934 665 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 TTLL4Q14679 1199 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 CCDC70Q6NSX1 233 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 ABHD15Q6UXT9 468 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 PLPPR4Q7Z2D5 763 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 NELFCDQ8IXH7 590 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 SCFD2Q8WU76 684 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 BBXQ8WY36 941 aaPredicted RBP8.22□□□□□ -1.09
VPS39-204ENST00000561818 DHX38Q92620 1227 aaKnown RBP8.22□□□□□ -1.09
VPS39-204ENST00000561818 RUBCNQ92622 972 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 JAKMIP2Q96AA8 810 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 CEP170P1Q96L14 293 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 STRA6Q9BX79 667 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 NIFKQ9BYG3 293 aaKnown RBP8.22□□□□□ -1.09
VPS39-204ENST00000561818 ELP3Q9H9T3 547 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 CYP26B1Q9NR63 512 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 DMAC2Q9NW81 257 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 AIPL1Q9NZN9 384 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 RNF14Q9UBS8 474 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 MORF4L1Q9UBU8 362 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 USP20Q9Y2K6 914 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 OTOFQ9HC10 1997 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 ASTN1O14525 1302 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 EMSYQ7Z589 1322 aa8.22□□□□□ -1.09
VPS39-204ENST00000561818 IGKV6D-21A0A0A0MT36 114 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 BTNL10A8MVZ5 291 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 EFCAB8A8MWE9 144 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 RBAK-RBAKDNI3L0D1 243 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 AKR1B10O60218 316 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 TACC1O75410 805 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 OATP04181 439 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 RPLP2P05387 115 aaKnown RBP8.21□□□□□ -1.1
VPS39-204ENST00000561818 YBX3P16989 372 aaKnown RBP eCLIP8.21□□□□□ -1.1
VPS39-204ENST00000561818 ERCC3P19447 782 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 VAV2P52735 878 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 GNG11P61952 73 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 ERVK-9P63128 1117 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 ERVK-24P63145 666 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 UBXN2AP68543 259 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 PRKCEQ02156 737 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 POU5F1BQ06416 359 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 TFDP1Q14186 410 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 PCBP1Q15365 356 aaKnown RBP eCLIP8.21□□□□□ -1.1
VPS39-204ENST00000561818 SURF1Q15526 300 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 WHAMMP3Q1A5X7 153 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 FAM110CQ1W6H9 321 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 EAPPQ56P03 285 aaPredicted RBP8.21□□□□□ -1.1
VPS39-204ENST00000561818 TCERG1LQ5VWI1 586 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 HAUS6Q7Z4H7 955 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 BANK1Q8NDB2 785 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 IL31RAQ8NI17 732 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 TMC2Q8TDI7 906 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 CPLX3Q8WVH0 158 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 LMBR1Q8WVP7 490 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 EMID1Q96A84 441 aaPredicted RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms