RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 HOXC6P09630 235 aa23.4■■□□□ 1.34
CLN3-209ENST00000561689 DMP1Q13316 513 aaPredicted RBP23.4■■□□□ 1.34
CLN3-209ENST00000561689 DEFB115Q30KQ5 88 aa23.4■■□□□ 1.34
CLN3-209ENST00000561689 CEP135Q66GS9 1140 aa23.4■■□□□ 1.34
CLN3-209ENST00000561689 MSL3Q8N5Y2 521 aaKnown RBP23.4■■□□□ 1.34
CLN3-209ENST00000561689 AFG1LQ8WV93 481 aa23.4■■□□□ 1.34
CLN3-209ENST00000561689 TMEM143Q96AN5 459 aa23.4■■□□□ 1.34
CLN3-209ENST00000561689 GJD2Q9UKL4 321 aa23.4■■□□□ 1.34
CLN3-209ENST00000561689 WDR81Q562E7 1941 aa23.4■■□□□ 1.34
CLN3-209ENST00000561689 TARBP2Q15633 366 aaKnown RBP23.4■■□□□ 1.34
CLN3-209ENST00000561689 SYCP3Q8IZU3 236 aa23.4■■□□□ 1.34
CLN3-209ENST00000561689 SLC7A3Q8WY07 619 aa23.4■■□□□ 1.34
CLN3-209ENST00000561689 CAPNS2Q96L46 248 aa23.4■■□□□ 1.34
CLN3-209ENST00000561689 POLR3FQ9H1D9 316 aaPredicted RBP23.4■■□□□ 1.34
CLN3-209ENST00000561689 DHX33Q9H6R0 707 aaKnown RBP23.4■■□□□ 1.34
CLN3-209ENST00000561689 PYCARDQ9ULZ3 195 aa23.4■■□□□ 1.34
CLN3-209ENST00000561689 EMSYQ7Z589 1322 aa23.39■■□□□ 1.34
CLN3-209ENST00000561689 SFPQP23246 707 aaKnown RBP eCLIP23.39■■□□□ 1.33
CLN3-209ENST00000561689 SMTNP53814 917 aa23.39■■□□□ 1.33
CLN3-209ENST00000561689 NCKAP1LP55160 1127 aa23.39■■□□□ 1.33
CLN3-209ENST00000561689 CCDC150Q8NCX0 1101 aa23.39■■□□□ 1.33
CLN3-209ENST00000561689 FAM167AQ96KS9 214 aa23.39■■□□□ 1.33
CLN3-209ENST00000561689 GBP3Q9H0R5 595 aa23.39■■□□□ 1.33
CLN3-209ENST00000561689 SMARCAD1Q9H4L7 1026 aa23.39■■□□□ 1.33
CLN3-209ENST00000561689 GNA14O95837 355 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 CYP2C19P33261 490 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 RGS2P41220 211 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 PLCB4Q15147 1175 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 DUSP28Q4G0W2 176 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 VWA3BQ502W6 1294 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 PPTC7Q8NI37 304 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 ATP8B4Q8TF62 1192 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 BBXQ8WY36 941 aaPredicted RBP23.38■■□□□ 1.33
CLN3-209ENST00000561689 KMT5AQ9NQR1 393 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 ADCY6O43306 1168 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 RPL13P26373 211 aaKnown RBP23.38■■□□□ 1.33
CLN3-209ENST00000561689 MYH9P35579 1960 aaKnown RBP23.38■■□□□ 1.33
CLN3-209ENST00000561689 DNM2P50570 870 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 GTF2BQ00403 316 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 TBC1D8BQ0IIM8 1120 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 ALCAMQ13740 583 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 MAN2A1Q16706 1144 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 IQSEC1Q6DN90 963 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 HS2ST1Q7LGA3 356 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 TMEM161BQ8NDZ6 487 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 CPLX3Q8WVH0 158 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 SOCS4Q8WXH5 440 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 EMID1Q96A84 441 aaPredicted RBP23.38■■□□□ 1.33
CLN3-209ENST00000561689 ARHGAP39Q9C0H5 1083 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 ST6GALNAC4Q9H4F1 302 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 C17orf75Q9HAS0 396 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 AGPAT3Q9NRZ7 376 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 ZNF236Q9UL36 1845 aa23.38■■□□□ 1.33
CLN3-209ENST00000561689 ALDH1A1P00352 501 aa23.37■■□□□ 1.33
CLN3-209ENST00000561689 SPIRE2Q8WWL2 714 aa23.37■■□□□ 1.33
CLN3-209ENST00000561689 ACCSQ96QU6 501 aa23.37■■□□□ 1.33
CLN3-209ENST00000561689 NDST4Q9H3R1 872 aa23.37■■□□□ 1.33
CLN3-209ENST00000561689 DOCK3Q8IZD9 2030 aa23.37■■□□□ 1.33
CLN3-209ENST00000561689 ITIH6Q6UXX5 1313 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 RASSF10A6NK89 507 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 AKAP3O75969 853 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 LGALS2P05162 132 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 RFC5P40937 340 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 CASP4P49662 377 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 ADKP55263 362 aaKnown RBP23.36■■□□□ 1.33
CLN3-209ENST00000561689 RTP1P59025 263 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 RBL2Q08999 1139 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 IFT74Q96LB3 600 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 APBA2Q99767 749 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 NTPCRQ9BSD7 190 aaKnown RBP23.36■■□□□ 1.33
CLN3-209ENST00000561689 TMEM206Q9H813 350 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 CREBZFQ9NS37 354 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 TRPC6Q9Y210 931 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 ADGRA3Q8IWK6 1321 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 ZBTB42B2RXF5 422 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 TISP43B9A030 160 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 SKILP12757 684 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 SLC26A2P50443 739 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 CCZ1BP86790 482 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 CCZ1P86791 482 aaPredicted RBP23.36■■□□□ 1.33
CLN3-209ENST00000561689 TNFAIP2Q03169 654 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 PPFIBP1Q86W92 1011 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 ZNF784Q8NCA9 323 aaPredicted RBP23.36■■□□□ 1.33
CLN3-209ENST00000561689 SLC17A8Q8NDX2 589 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 OR6J1Q8NGC5 347 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 RNPEPQ9H4A4 650 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 ERAP1Q9NZ08 941 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 PCNTO95613 3336 aa23.36■■□□□ 1.33
CLN3-209ENST00000561689 MYH11P35749 1972 aa23.35■■□□□ 1.33
CLN3-209ENST00000561689 DENND3A2RUS2 1198 aa23.35■■□□□ 1.33
CLN3-209ENST00000561689 ZNF286BP0CG31 522 aa23.35■■□□□ 1.33
CLN3-209ENST00000561689 PSMC4P43686 418 aa23.35■■□□□ 1.33
CLN3-209ENST00000561689 MARSP56192 900 aaKnown RBP23.35■■□□□ 1.33
CLN3-209ENST00000561689 TRIM59Q8IWR1 403 aa23.35■■□□□ 1.33
CLN3-209ENST00000561689 C17orf53Q8N3J3 647 aaPredicted RBP23.35■■□□□ 1.33
CLN3-209ENST00000561689 ASAP3Q8TDY4 903 aa23.35■■□□□ 1.33
CLN3-209ENST00000561689 TBX20Q9UMR3 447 aa23.35■■□□□ 1.33
CLN3-209ENST00000561689 MAFO75444 373 aaPredicted RBP23.34■■□□□ 1.33
CLN3-209ENST00000561689 ARL2P36404 184 aa23.34■■□□□ 1.33
CLN3-209ENST00000561689 CYP2J2P51589 502 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms