RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 SLITRK3O94933 977 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 PRKCBP05771 671 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 AKR1A1P14550 325 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 CYP11B2P19099 503 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 GRK4P32298 578 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 ZNF75DP51815 510 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 ZNF200P98182 395 aaPredicted RBP5.94□□□□□ -1.46
VPS13C-209ENST00000560637 PDIA5Q14554 519 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 IL17AQ16552 155 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 BTNL9Q6UXG8 535 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 FAM167AQ96KS9 214 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 CCSER1Q9C0I3 900 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 LUC7LQ9NQ29 371 aaKnown RBP5.94□□□□□ -1.46
VPS13C-209ENST00000560637 CYP26B1Q9NR63 512 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 CREBZFQ9NS37 354 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 USTQ9Y2C2 406 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 TELO2Q9Y4R8 837 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 STK24Q9Y6E0 443 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 ACTN4O43707 911 aaKnown RBP5.94□□□□□ -1.46
VPS13C-209ENST00000560637 DGAT1O75907 488 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 NR3C1P04150 777 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 GNAT1P11488 350 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 CCNE1P24864 410 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 PHKA2P46019 1235 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 LBX1P52954 281 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 ZNF445P59923 1031 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 SNW1Q13573 536 aaKnown RBP5.94□□□□□ -1.46
VPS13C-209ENST00000560637 ECM1Q16610 540 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 ANKRD40Q6AI12 368 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 DAGLBQ8NCG7 672 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 NPLOC4Q8TAT6 608 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 GTF3C2Q8WUA4 911 aaPredicted RBP5.94□□□□□ -1.46
VPS13C-209ENST00000560637 ERO1AQ96HE7 468 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 HES2Q9Y543 173 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 COL5A3P25940 1745 aaPredicted RBP5.94□□□□□ -1.46
VPS13C-209ENST00000560637 GON4LQ3T8J9 2241 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 C2CD2LO14523 706 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 TEX33O43247 280 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 RPS6KA5O75582 802 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 CAVIN2O95810 425 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 CCNE2O96020 404 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 TNNC2P02585 160 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 LGALS2P05162 132 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 CPT1AP50416 773 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 MXI1P50539 228 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 COPB1P53618 953 aaKnown RBP5.94□□□□□ -1.46
VPS13C-209ENST00000560637 C1QTNF8P60827 252 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 KLHL30Q0D2K2 578 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 AMHR2Q16671 573 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 EXOC3L4Q17RC7 722 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 ANKRD23Q86SG2 305 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 ZNF579Q8NAF0 562 aaKnown RBP5.94□□□□□ -1.46
VPS13C-209ENST00000560637 DNERQ8NFT8 737 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 ZNF296Q8WUU4 475 aaPredicted RBP5.94□□□□□ -1.46
VPS13C-209ENST00000560637 ZBED3Q96IU2 234 aaPredicted RBP5.94□□□□□ -1.46
VPS13C-209ENST00000560637 IWS1Q96ST2 819 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 MED10Q9BTT4 135 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 CUEDC2Q9H467 287 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 RPF1Q9H9Y2 349 aaKnown RBP5.94□□□□□ -1.46
VPS13C-209ENST00000560637 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.94□□□□□ -1.46
VPS13C-209ENST00000560637 ZNF536O15090 1300 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 CACNA1SQ13698 1873 aa5.94□□□□□ -1.46
VPS13C-209ENST00000560637 N4BP2Q86UW6 1770 aaPredicted RBP5.93□□□□□ -1.46
VPS13C-209ENST00000560637 AKR1B15C9JRZ8 316 aaPredicted RBP5.93□□□□□ -1.46
VPS13C-209ENST00000560637 PIK3R2O00459 728 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 ARIH2O95376 493 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 GAP43P17677 238 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 CASP14P31944 242 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 PSMC2P35998 433 aaKnown RBP5.93□□□□□ -1.46
VPS13C-209ENST00000560637 PRPHP41219 470 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 HACE1Q8IYU2 909 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 MAML3Q96JK9 1138 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 ZBTB45Q96K62 511 aaPredicted RBP5.93□□□□□ -1.46
VPS13C-209ENST00000560637 CAPZA3Q96KX2 299 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 PNMA5Q96PV4 448 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 POP1Q99575 1024 aaKnown RBP5.93□□□□□ -1.46
VPS13C-209ENST00000560637 PI4K2AQ9BTU6 479 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 CCDC94Q9BW85 323 aaPredicted RBP5.93□□□□□ -1.46
VPS13C-209ENST00000560637 GCOM2Q9BZD3 368 aaPredicted RBP5.93□□□□□ -1.46
VPS13C-209ENST00000560637 C1orf112Q9NSG2 853 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 GCNT4Q9P109 453 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.93□□□□□ -1.46
VPS13C-209ENST00000560637 V9GYY5 206 aaPredicted RBP5.93□□□□□ -1.46
VPS13C-209ENST00000560637 C17orf102A2RUQ5 167 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 ZNF233A6NK53 670 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 HBP1O60381 514 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 GFPT2O94808 682 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 ITGBL1O95965 494 aaPredicted RBP5.93□□□□□ -1.46
VPS13C-209ENST00000560637 TNFAIP3P21580 790 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 CIITAP33076 1130 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 NUMBP49757 651 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 RARRES1P49788 294 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 OAZ1P54368 228 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 BCAR1P56945 870 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 MYL7Q01449 175 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 ORC1Q13415 861 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 KRT31Q15323 416 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 PTPN14Q15678 1187 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 NPY5RQ15761 445 aa5.93□□□□□ -1.46
VPS13C-209ENST00000560637 KNOP1Q1ED39 458 aaKnown RBP5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms