RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 PFASO15067 1338 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 GOLGA8IPA6NC78 632 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 GOLGA8JA6NMD2 632 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 FOXP2O15409 715 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 KRT7P08729 469 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 OR6B3Q8NGW1 331 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 HSPH1Q92598 858 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 TOPORSQ9NS56 1045 aaPredicted RBP14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 OLA1Q9NTK5 396 aaKnown RBP14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 CCDC22O60826 627 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 GGPS1O95749 300 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 DRP2Q13474 957 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 CTTNQ14247 550 aaKnown RBP14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 NAALADL2Q58DX5 795 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 DCAF4Q8WV16 495 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 RUBCNQ92622 972 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 MTBPQ96DY7 904 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 TAF1DQ9H5J8 278 aaPredicted RBP14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 SEC31BQ9NQW1 1179 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 LRRC53A6NM62 1247 aa14.08□□□□□ -0.15
CSPG4P11-201ENST00000560634 TBXAS1P24557 533 aaPredicted RBP14.08□□□□□ -0.15
CSPG4P11-201ENST00000560634 SERPINB4P48594 390 aa14.08□□□□□ -0.15
CSPG4P11-201ENST00000560634 OSTNP61366 133 aa14.08□□□□□ -0.15
CSPG4P11-201ENST00000560634 EP400NLQ6ZTU2 488 aa14.08□□□□□ -0.15
CSPG4P11-201ENST00000560634 STAMBPL1Q96FJ0 436 aa14.08□□□□□ -0.15
CSPG4P11-201ENST00000560634 SENP1Q9P0U3 644 aa14.08□□□□□ -0.15
CSPG4P11-201ENST00000560634 SNX2O60749 519 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 KCNH2Q12809 1159 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 FAM83BQ5T0W9 1011 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 PDXDC1Q6P996 788 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 SCARA5Q6ZMJ2 495 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 RNF217Q8TC41 542 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 OSBPL9Q96SU4 736 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 ZNF521Q96K83 1311 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 SASH1O94885 1247 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 BEND6Q5SZJ8 279 aaPredicted RBP14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 PPP1R18Q6NYC8 613 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 TBC1D22BQ9NU19 505 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 BFARQ9NZS9 450 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 ASAP1Q9ULH1 1129 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 ADGRG1Q9Y653 693 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 PPP1R12AO14974 1030 aaPredicted RBP14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 CLDN3O15551 220 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 ASAP2O43150 1006 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 TMCC1O94876 653 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 PYGLP06737 847 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 ELF1P32519 619 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 AARSP49588 968 aaKnown RBP eCLIP14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 HDAC4P56524 1084 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 HDLBPQ00341 1268 aaKnown RBP14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 PFKFB3Q16875 520 aaPredicted RBP14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 CDO1Q16878 200 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 ZBTB41Q5SVQ8 909 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 ENOSF1Q7L5Y1 443 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 TTC8Q8TAM2 541 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 ATP6V1G3Q96LB4 118 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 TRPV6Q9H1D0 765 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 VPS11Q9H270 941 aa14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 CHCHD3Q9NX63 227 aaKnown RBP14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.08□□□□□ -0.16
CSPG4P11-201ENST00000560634 SRGAP2CP0DJJ0 459 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 TRIM72Q6ZMU5 477 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 ATP11CQ8NB49 1132 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 DYNLL2Q96FJ2 89 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 ASPSCR1Q9BZE9 553 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 A0A1W2PQC6 194 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 MYBL1P10243 752 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 KRT4P19013 534 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 EIF2AK2P19525 551 aaKnown RBP14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 ATP6V1E1P36543 226 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 RASGRF1Q13972 1273 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 PI16Q6UXB8 463 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 FRA10AC1Q70Z53 315 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 FMR1NBQ8N0W7 255 aaPredicted RBP14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 GUF1Q8N442 669 aaKnown RBP14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 GIMAP8Q8ND71 665 aaPredicted RBP14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 WNT8AQ9H1J5 351 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 ETNK1Q9HBU6 452 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 STAP1Q9ULZ2 295 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 ASNSP08243 561 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 MAPK6Q16659 721 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 C16orf87Q6PH81 154 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 NLRP14Q86W24 1093 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 SNX19Q92543 992 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 MTRQ99707 1265 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 ATP6V0A4Q9HBG4 840 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 TARSL2A2RTX5 802 aaKnown RBP14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 USP17L3A6NCW0 530 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 USP17L4A6NCW7 530 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 SDC4P31431 198 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 MECOMQ03112 1051 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 MAPRE2Q15555 327 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 RWDD4Q6NW29 188 aaKnown RBP14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 LRRC31Q6UY01 552 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 USP17L1Q7RTZ2 530 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 PIH1D3Q9NQM4 214 aaKnown RBP14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 ARHGAP26Q9UNA1 814 aa14.07□□□□□ -0.16
CSPG4P11-201ENST00000560634 GOLGA8MH3BSY2 632 aa14.06□□□□□ -0.16
CSPG4P11-201ENST00000560634 ZBTB5O15062 677 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms