RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 NBNO60934 754 aa24.2■■□□□ 1.46
SNX1-210ENST00000560260 GPR32O75388 356 aa24.2■■□□□ 1.46
SNX1-210ENST00000560260 RSPH10BP0C881 870 aa24.2■■□□□ 1.46
SNX1-210ENST00000560260 CSF2RAP15509 400 aa24.2■■□□□ 1.46
SNX1-210ENST00000560260 TMOD1P28289 359 aa24.2■■□□□ 1.46
SNX1-210ENST00000560260 STAT6P42226 847 aa24.2■■□□□ 1.46
SNX1-210ENST00000560260 MAGEA10P43363 369 aaPredicted RBP24.2■■□□□ 1.46
SNX1-210ENST00000560260 GPC3P51654 580 aa24.2■■□□□ 1.46
SNX1-210ENST00000560260 MDM2Q00987 491 aaPredicted RBP24.2■■□□□ 1.46
SNX1-210ENST00000560260 MAPK7Q13164 816 aa24.2■■□□□ 1.46
SNX1-210ENST00000560260 DHX8Q14562 1220 aaKnown RBP24.2■■□□□ 1.46
SNX1-210ENST00000560260 KIZQ2M2Z5 673 aa24.2■■□□□ 1.46
SNX1-210ENST00000560260 RSPH3Q86UC2 560 aa24.2■■□□□ 1.46
SNX1-210ENST00000560260 KSR1Q8IVT5 923 aa24.2■■□□□ 1.46
SNX1-210ENST00000560260 NME8Q8N427 588 aa24.2■■□□□ 1.46
SNX1-210ENST00000560260 FSIP1Q8NA03 581 aa24.2■■□□□ 1.46
SNX1-210ENST00000560260 DHX58Q96C10 678 aa24.2■■□□□ 1.46
SNX1-210ENST00000560260 ADAMTS10Q9H324 1103 aa24.2■■□□□ 1.46
SNX1-210ENST00000560260 NPHP3-ACAD11A0A0J9YXS1 232 aa24.19■■□□□ 1.46
SNX1-210ENST00000560260 GAS2O43903 313 aaKnown RBP24.19■■□□□ 1.46
SNX1-210ENST00000560260 ARL2P36404 184 aa24.19■■□□□ 1.46
SNX1-210ENST00000560260 EPHB4P54760 987 aa24.19■■□□□ 1.46
SNX1-210ENST00000560260 ARSHQ5FYA8 562 aa24.19■■□□□ 1.46
SNX1-210ENST00000560260 IER5Q5VY09 327 aa24.19■■□□□ 1.46
SNX1-210ENST00000560260 CLEC17AQ6ZS10 378 aa24.19■■□□□ 1.46
SNX1-210ENST00000560260 GPBP1Q86WP2 473 aa24.19■■□□□ 1.46
SNX1-210ENST00000560260 EXOC8Q8IYI6 725 aa24.19■■□□□ 1.46
SNX1-210ENST00000560260 DAW1Q8N136 415 aa24.19■■□□□ 1.46
SNX1-210ENST00000560260 MRPS27Q92552 414 aaKnown RBP24.19■■□□□ 1.46
SNX1-210ENST00000560260 CELF4Q9BZC1 486 aaKnown RBP24.19■■□□□ 1.46
SNX1-210ENST00000560260 POLR3FQ9H1D9 316 aaPredicted RBP24.19■■□□□ 1.46
SNX1-210ENST00000560260 KCNH3Q9ULD8 1083 aa24.19■■□□□ 1.46
SNX1-210ENST00000560260 CEP290O15078 2479 aa24.19■■□□□ 1.46
SNX1-210ENST00000560260 TET1Q8NFU7 2136 aa24.19■■□□□ 1.46
SNX1-210ENST00000560260 POLR2DO15514 142 aaKnown RBP24.18■■□□□ 1.46
SNX1-210ENST00000560260 GADD45BO75293 160 aaPredicted RBP24.18■■□□□ 1.46
SNX1-210ENST00000560260 RPLP2P05387 115 aaKnown RBP24.18■■□□□ 1.46
SNX1-210ENST00000560260 NDUFA8P51970 172 aa24.18■■□□□ 1.46
SNX1-210ENST00000560260 TCTN1Q2MV58 587 aa24.18■■□□□ 1.46
SNX1-210ENST00000560260 FAM102BQ5T8I3 360 aa24.18■■□□□ 1.46
SNX1-210ENST00000560260 MCPH1Q8NEM0 835 aa24.18■■□□□ 1.46
SNX1-210ENST00000560260 TMEM40Q8WWA1 233 aa24.18■■□□□ 1.46
SNX1-210ENST00000560260 PRPF31Q8WWY3 499 aaKnown RBP24.18■■□□□ 1.46
SNX1-210ENST00000560260 PSPC1Q8WXF1 523 aaKnown RBP24.18■■□□□ 1.46
SNX1-210ENST00000560260 BSNDQ8WZ55 320 aa24.18■■□□□ 1.46
SNX1-210ENST00000560260 OSMRQ99650 979 aa24.18■■□□□ 1.46
SNX1-210ENST00000560260 COL4A3BPQ9Y5P4 624 aa24.18■■□□□ 1.46
SNX1-210ENST00000560260 GLRA2P23416 452 aa24.17■■□□□ 1.46
SNX1-210ENST00000560260 GUCY2CP25092 1073 aa24.17■■□□□ 1.46
SNX1-210ENST00000560260 DNM2P50570 870 aa24.17■■□□□ 1.46
SNX1-210ENST00000560260 NLRP11P59045 1033 aaKnown RBP24.17■■□□□ 1.46
SNX1-210ENST00000560260 CACNB1Q02641 598 aaPredicted RBP24.17■■□□□ 1.46
SNX1-210ENST00000560260 RAD51AP2Q09MP3 1159 aa24.17■■□□□ 1.46
SNX1-210ENST00000560260 CAPSQ13938 189 aa24.17■■□□□ 1.46
SNX1-210ENST00000560260 LPIN1Q14693 890 aa24.17■■□□□ 1.46
SNX1-210ENST00000560260 RHPN2Q8IUC4 686 aa24.17■■□□□ 1.46
SNX1-210ENST00000560260 TCP11Q8WWU5 503 aa24.17■■□□□ 1.46
SNX1-210ENST00000560260 GINS2Q9Y248 185 aa24.17■■□□□ 1.46
SNX1-210ENST00000560260 HIP1RO75146 1068 aa24.16■■□□□ 1.46
SNX1-210ENST00000560260 GHRP10912 638 aa24.16■■□□□ 1.46
SNX1-210ENST00000560260 FPGSQ05932 587 aa24.16■■□□□ 1.46
SNX1-210ENST00000560260 LAMTOR4Q0VGL1 99 aa24.16■■□□□ 1.46
SNX1-210ENST00000560260 FBXO47Q5MNV8 452 aa24.16■■□□□ 1.46
SNX1-210ENST00000560260 DEFB128Q7Z7B8 93 aa24.16■■□□□ 1.46
SNX1-210ENST00000560260 TMEM199Q8N511 208 aa24.16■■□□□ 1.46
SNX1-210ENST00000560260 A0A087WZ62 844 aa24.15■■□□□ 1.46
SNX1-210ENST00000560260 MYMKA6NI61 221 aa24.15■■□□□ 1.46
SNX1-210ENST00000560260 ACTN4O43707 911 aaKnown RBP24.15■■□□□ 1.46
SNX1-210ENST00000560260 CXCL10P02778 98 aa24.15■■□□□ 1.46
SNX1-210ENST00000560260 C16orf59Q7L2K0 433 aa24.15■■□□□ 1.46
SNX1-210ENST00000560260 IQUBQ8NA54 791 aa24.15■■□□□ 1.46
SNX1-210ENST00000560260 STAMQ92783 540 aa24.15■■□□□ 1.46
SNX1-210ENST00000560260 NLRP4Q96MN2 994 aa24.15■■□□□ 1.46
SNX1-210ENST00000560260 GDF15Q99988 308 aa24.15■■□□□ 1.46
SNX1-210ENST00000560260 REEP2Q9BRK0 252 aa24.15■■□□□ 1.46
SNX1-210ENST00000560260 FDXACB1Q9BRP7 624 aaPredicted RBP24.15■■□□□ 1.46
SNX1-210ENST00000560260 AGO3Q9H9G7 860 aaKnown RBP24.15■■□□□ 1.46
SNX1-210ENST00000560260 SERTAD1Q9UHV2 236 aa24.15■■□□□ 1.46
SNX1-210ENST00000560260 M0QZ92 97 aa24.14■■□□□ 1.46
SNX1-210ENST00000560260 ACRP10323 421 aa24.14■■□□□ 1.46
SNX1-210ENST00000560260 RFC2P35250 354 aa24.14■■□□□ 1.46
SNX1-210ENST00000560260 CRYBB1P53674 252 aaPredicted RBP24.14■■□□□ 1.46
SNX1-210ENST00000560260 NLRP7Q8WX94 980 aa24.14■■□□□ 1.46
SNX1-210ENST00000560260 LBHD1Q9BQE6 289 aaPredicted RBP24.14■■□□□ 1.46
SNX1-210ENST00000560260 IL23AQ9NPF7 189 aa24.14■■□□□ 1.46
SNX1-210ENST00000560260 SYKP43405 635 aa24.13■■□□□ 1.45
SNX1-210ENST00000560260 PPIGQ13427 754 aaKnown RBP eCLIP24.13■■□□□ 1.454e-7■□□□□ 10.2
SNX1-210ENST00000560260 GIT2Q14161 759 aa24.13■■□□□ 1.45
SNX1-210ENST00000560260 CSPP1Q1MSJ5 1256 aa24.13■■□□□ 1.45
SNX1-210ENST00000560260 SV2BQ7L1I2 683 aa24.13■■□□□ 1.45
SNX1-210ENST00000560260 RNF149Q8NC42 400 aa24.13■■□□□ 1.45
SNX1-210ENST00000560260 CUEDC2Q9H467 287 aa24.13■■□□□ 1.45
SNX1-210ENST00000560260 IFT122Q9HBG6 1241 aa24.13■■□□□ 1.45
SNX1-210ENST00000560260 KBTBD4Q9NVX7 518 aa24.13■■□□□ 1.45
SNX1-210ENST00000560260 KCND2Q9NZV8 630 aa24.13■■□□□ 1.45
SNX1-210ENST00000560260 NOC2LQ9Y3T9 749 aaKnown RBP24.13■■□□□ 1.45
SNX1-210ENST00000560260 SFI1A8K8P3 1242 aa24.12■■□□□ 1.45
SNX1-210ENST00000560260 CSDE1O75534 798 aaKnown RBP24.12■■□□□ 1.45
SNX1-210ENST00000560260 SRGAP2CP0DJJ0 459 aa24.12■■□□□ 1.45
SNX1-210ENST00000560260 LONRF3Q496Y0 759 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms