RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 ZNF558Q96NG5 402 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 SCLT1Q96NL6 688 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 RIT2Q99578 217 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 C22orf23Q9BZE7 217 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 ADAMTS10Q9H324 1103 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 ENTPD7Q9NQZ7 604 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 DACT1Q9NYF0 836 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 PIEZO1Q92508 2521 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 EVPLQ92817 2033 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 A0A0U1RQF3 1178 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 GAS7O60861 476 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 OATP04181 439 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 DARSP14868 501 aaKnown RBP10.35□□□□□ -0.75
HDDC3-204ENST00000559834 PSMA5P28066 241 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 ALDH7A1P49419 539 aaKnown RBP10.35□□□□□ -0.75
HDDC3-204ENST00000559834 DNM2P50570 870 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 JAK3P52333 1124 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 PTPN5P54829 565 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 TBC1D8BQ0IIM8 1120 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 TPRNQ4KMQ1 711 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 PLPP4Q5VZY2 271 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 CES5AQ6NT32 575 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 LRRC55Q6ZSA7 311 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 CENPQQ7L2Z9 268 aaPredicted RBP10.35□□□□□ -0.75
HDDC3-204ENST00000559834 ZBTB33Q86T24 672 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 FBXL16Q8N461 479 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 FBXL6Q8N531 539 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 TMEM87AQ8NBN3 555 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 CASP10Q92851 521 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 CCDC136Q96JN2 1154 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 JAKMIP1Q96N16 626 aaKnown RBP10.35□□□□□ -0.75
HDDC3-204ENST00000559834 RNF26Q9BY78 433 aaPredicted RBP10.35□□□□□ -0.75
HDDC3-204ENST00000559834 MRPL9Q9BYD2 267 aaKnown RBP10.35□□□□□ -0.75
HDDC3-204ENST00000559834 GCOM2Q9BZD3 368 aaPredicted RBP10.35□□□□□ -0.75
HDDC3-204ENST00000559834 INO80BQ9C086 356 aaPredicted RBP10.35□□□□□ -0.75
HDDC3-204ENST00000559834 IRF2BPLQ9H1B7 796 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 S1PR5Q9H228 398 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 SH3GLB2Q9NR46 395 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 CHST12Q9NRB3 414 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 LOXHD1Q8IVV2 1947 aa10.35□□□□□ -0.75
HDDC3-204ENST00000559834 MSH4O15457 936 aa10.34□□□□□ -0.75
HDDC3-204ENST00000559834 SKIP12755 728 aa10.34□□□□□ -0.75
HDDC3-204ENST00000559834 GPC3P51654 580 aa10.34□□□□□ -0.75
HDDC3-204ENST00000559834 NLRP5P59047 1200 aa10.34□□□□□ -0.75
HDDC3-204ENST00000559834 ITIH3Q06033 890 aa10.34□□□□□ -0.75
HDDC3-204ENST00000559834 KCNC3Q14003 757 aa10.34□□□□□ -0.75
HDDC3-204ENST00000559834 SMC1AQ14683 1233 aaKnown RBP10.34□□□□□ -0.75
HDDC3-204ENST00000559834 LRRC71Q8N4P6 559 aa10.34□□□□□ -0.75
HDDC3-204ENST00000559834 LINC01465Q8N7H1 131 aa10.34□□□□□ -0.75
HDDC3-204ENST00000559834 MRPL43Q8N983 215 aaKnown RBP10.34□□□□□ -0.75
HDDC3-204ENST00000559834 RNF169Q8NCN4 708 aa10.34□□□□□ -0.75
HDDC3-204ENST00000559834 VN1R2Q8NFZ6 395 aa10.34□□□□□ -0.75
HDDC3-204ENST00000559834 RDM1Q8NG50 284 aa10.34□□□□□ -0.75
HDDC3-204ENST00000559834 NLRP7Q8WX94 980 aa10.34□□□□□ -0.75
HDDC3-204ENST00000559834 KCNB2Q92953 911 aa10.34□□□□□ -0.75
HDDC3-204ENST00000559834 PHKBQ93100 1093 aa10.34□□□□□ -0.75
HDDC3-204ENST00000559834 NECTIN4Q96NY8 510 aa10.34□□□□□ -0.75
HDDC3-204ENST00000559834 TEKT3Q9BXF9 490 aa10.34□□□□□ -0.75
HDDC3-204ENST00000559834 HCSTQ9UBK5 93 aa10.34□□□□□ -0.75
HDDC3-204ENST00000559834 NR2E1Q9Y466 385 aa10.34□□□□□ -0.75
HDDC3-204ENST00000559834 MYH9P35579 1960 aaKnown RBP10.34□□□□□ -0.75
HDDC3-204ENST00000559834 TECTAO75443 2155 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 ZNF862O60290 1169 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 CPA1P15085 419 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 IFNAR1P17181 557 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 HSPA4P34932 840 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 RBM10P98175 930 aaKnown RBP10.33□□□□□ -0.76
HDDC3-204ENST00000559834 PRKCEQ02156 737 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 GIT2Q14161 759 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 PTPN21Q16825 1174 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 XKR3Q5GH77 459 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 LRCH2Q5VUJ6 765 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 LLGL2Q6P1M3 1020 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 SYCE2Q6PIF2 218 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 MIER3Q7Z3K6 550 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 TRIM22Q8IYM9 498 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 SLC39A11Q8N1S5 342 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 SLC5A5Q92911 643 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 LENG9Q96B70 501 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 TMEM169Q96HH4 297 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 SLC26A6Q9BXS9 759 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 NIFKQ9BYG3 293 aaKnown RBP10.33□□□□□ -0.76
HDDC3-204ENST00000559834 ADAM7Q9H2U9 754 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 RNF19AQ9NV58 838 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 ATG2AQ2TAZ0 1938 aa10.33□□□□□ -0.76
HDDC3-204ENST00000559834 FNDC1Q4ZHG4 1894 aaPredicted RBP10.32□□□□□ -0.76
HDDC3-204ENST00000559834 C2orf71A6NGG8 1288 aa10.32□□□□□ -0.76
HDDC3-204ENST00000559834 HIDE1A8MVS5 230 aa10.32□□□□□ -0.76
HDDC3-204ENST00000559834 ADAMTS3O15072 1205 aa10.32□□□□□ -0.76
HDDC3-204ENST00000559834 CHMP2AO43633 222 aa10.32□□□□□ -0.76
HDDC3-204ENST00000559834 REC8O95072 547 aa10.32□□□□□ -0.76
HDDC3-204ENST00000559834 CXCL14O95715 111 aa10.32□□□□□ -0.76
HDDC3-204ENST00000559834 SFPQP23246 707 aaKnown RBP eCLIP10.32□□□□□ -0.76
HDDC3-204ENST00000559834 RPS6KB1P23443 525 aa10.32□□□□□ -0.76
HDDC3-204ENST00000559834 AVPR2P30518 371 aa10.32□□□□□ -0.76
HDDC3-204ENST00000559834 CA8P35219 290 aa10.32□□□□□ -0.76
HDDC3-204ENST00000559834 NUBP1P53384 320 aa10.32□□□□□ -0.76
HDDC3-204ENST00000559834 BCAR1P56945 870 aa10.32□□□□□ -0.76
HDDC3-204ENST00000559834 SSRP1Q08945 709 aaKnown RBP10.32□□□□□ -0.76
HDDC3-204ENST00000559834 TARBP2Q15633 366 aaKnown RBP10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms