RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 EMBQ6PCB8 327 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 MCF2L2Q86YR7 1114 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 TPH2Q8IWU9 490 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 FAM178BQ8IXR5 827 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 SYCE1Q8N0S2 351 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 LARGE2Q8N3Y3 721 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 AENQ8WTP8 325 aaKnown RBP7.94□□□□□ -1.14
VPS13C-206ENST00000558338 UIMC1Q96RL1 719 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 SELENOOQ9BVL4 669 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 TIPINQ9BVW5 301 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 TLR10Q9BXR5 811 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 PLA2G2EQ9NZK7 142 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 CWC15Q9P013 229 aaKnown RBP7.94□□□□□ -1.14
VPS13C-206ENST00000558338 STIM2Q9P246 746 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 VPS18Q9P253 973 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 ADAM21Q9UKJ8 722 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 HPCAL4Q9UM19 191 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 ZMYM2Q9UBW7 1377 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 A0A087X0T9 212 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 CLRN2A0PK11 232 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 LRRIQ3A6PVS8 624 aaPredicted RBP7.93□□□□□ -1.14
VPS13C-206ENST00000558338 RSPH10B2B2RC85 870 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 WDR46O15213 610 aaKnown RBP7.93□□□□□ -1.14
VPS13C-206ENST00000558338 BUB1O43683 1085 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 PALMO75781 387 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 ICAM1P05362 532 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 FAM228BP0C875 321 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 RSPH10BP0C881 870 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 STAT1P42224 750 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 HSD17B4P51659 736 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 JAM2P57087 298 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 SNRPFP62306 86 aaKnown RBP7.93□□□□□ -1.14
VPS13C-206ENST00000558338 TNNC1P63316 161 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 GHRHRQ02643 423 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 CTTNQ14247 550 aaKnown RBP7.93□□□□□ -1.14
VPS13C-206ENST00000558338 MEI1Q5TIA1 1274 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 LEKR1Q6ZMV7 388 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 LDHDQ86WU2 507 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 SLC9A9Q8IVB4 645 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 IFT20Q8IY31 132 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 NIM1KQ8IY84 436 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 SLC17A8Q8NDX2 589 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 ACER1Q8TDN7 264 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.93□□□□□ -1.14
VPS13C-206ENST00000558338 LPAR1Q92633 364 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 SLC35C1Q96A29 364 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 PBKQ96KB5 322 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 MXRA8Q9BRK3 442 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 UNC45AQ9H3U1 944 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 VEZTQ9HBM0 779 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 RGL1Q9NZL6 768 aa7.93□□□□□ -1.14
VPS13C-206ENST00000558338 RPTORQ8N122 1335 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 IPO5O00410 1097 aaKnown RBP7.92□□□□□ -1.14
VPS13C-206ENST00000558338 TGFB1I1O43294 461 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 CHMP2AO43633 222 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 IVLP07476 585 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 SLC9A1P19634 815 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 LMNB1P20700 586 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 KLRC1P26715 233 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 RXRBP28702 533 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 NPEPPSP55786 919 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 APBA1Q02410 837 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 MAP3K10Q02779 954 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 ARID5AQ03989 594 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 PTK2Q05397 1052 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 TNFAIP1Q13829 316 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 RPS6KA1Q15418 735 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 MUM1L1Q5H9M0 696 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 GPR153Q6NV75 609 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 B3GNT9Q6UX72 402 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 DNAJC14Q6Y2X3 702 aaPredicted RBP7.92□□□□□ -1.14
VPS13C-206ENST00000558338 ZNF720Q7Z2F6 126 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 IRF2BP2Q7Z5L9 587 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 CYP2W1Q8TAV3 490 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 AFAP1L1Q8TED9 768 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 PIGOQ8TEQ8 1089 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 TMEM174Q8WUU8 243 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 CAVIN3Q969G5 261 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 DDX27Q96GQ7 796 aaKnown RBP7.92□□□□□ -1.14
VPS13C-206ENST00000558338 LXNQ9BS40 222 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 REPIN1Q9BWE0 567 aaKnown RBP7.92□□□□□ -1.14
VPS13C-206ENST00000558338 TMEM206Q9H813 350 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 SUGCTQ9HAC7 445 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 ADAMTS1Q9UHI8 967 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 TCEAL9Q9UHQ7 104 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 SALL4Q9UJQ4 1053 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 CCPG1Q9ULG6 757 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 ZNRF3Q9ULT6 936 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 FAN1Q9Y2M0 1017 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 MYH10P35580 1976 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 MYH11P35749 1972 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 GOLGA6BA6NDN3 693 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 ERICH4A6NGS2 130 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 GOLGA8KD6RF30 607 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 CLIC2O15247 247 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 P4HA2O15460 535 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 OPA1O60313 960 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 RAD17O75943 681 aa7.92□□□□□ -1.14
VPS13C-206ENST00000558338 P4HBP07237 508 aaKnown RBP7.92□□□□□ -1.14
VPS13C-206ENST00000558338 H2AFZP0C0S5 128 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms