RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 TUFT1Q9NNX1 390 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 ANKEF1Q9NU02 776 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 LMCD1Q9NZU5 365 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 KCNG1Q9UIX4 513 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 VAV3Q9UKW4 847 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 PADI3Q9ULW8 664 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 TELO2Q9Y4R8 837 aa9.67□□□□□ -0.86
USP3-208ENST00000558285 MAFO75444 373 aaPredicted RBP9.66□□□□□ -0.86
USP3-208ENST00000558285 DGAT1O75907 488 aa9.66□□□□□ -0.86
USP3-208ENST00000558285 LYPLA2O95372 231 aa9.66□□□□□ -0.86
USP3-208ENST00000558285 U2AF2P26368 475 aaKnown RBP eCLIP9.66□□□□□ -0.862e-7■■■□□ 16.9
USP3-208ENST00000558285 CD52P31358 61 aa9.66□□□□□ -0.86
USP3-208ENST00000558285 PBX2P40425 430 aa9.66□□□□□ -0.86
USP3-208ENST00000558285 NLRP11P59045 1033 aaKnown RBP9.66□□□□□ -0.86
USP3-208ENST00000558285 TMEM62Q0P6H9 643 aa9.66□□□□□ -0.86
USP3-208ENST00000558285 BMS1Q14692 1282 aaKnown RBP9.66□□□□□ -0.86
USP3-208ENST00000558285 AAK1Q2M2I8 961 aa9.66□□□□□ -0.86
USP3-208ENST00000558285 B3GNT9Q6UX72 402 aa9.66□□□□□ -0.86
USP3-208ENST00000558285 SLC24A5Q71RS6 500 aa9.66□□□□□ -0.86
USP3-208ENST00000558285 BRAPQ7Z569 592 aa9.66□□□□□ -0.86
USP3-208ENST00000558285 APBB1IPQ7Z5R6 666 aaPredicted RBP9.66□□□□□ -0.86
USP3-208ENST00000558285 HSCBQ8IWL3 235 aa9.66□□□□□ -0.86
USP3-208ENST00000558285 HACE1Q8IYU2 909 aa9.66□□□□□ -0.86
USP3-208ENST00000558285 MCPH1Q8NEM0 835 aa9.66□□□□□ -0.86
USP3-208ENST00000558285 NACC1Q96RE7 527 aa9.66□□□□□ -0.86
USP3-208ENST00000558285 CHST12Q9NRB3 414 aa9.66□□□□□ -0.86
USP3-208ENST00000558285 GJB4Q9NTQ9 266 aa9.66□□□□□ -0.86
USP3-208ENST00000558285 SUCLA2Q9P2R7 463 aaPredicted RBP9.66□□□□□ -0.86
USP3-208ENST00000558285 MKI67P46013 3256 aaKnown RBP9.66□□□□□ -0.86
USP3-208ENST00000558285 PHLPP2Q6ZVD8 1323 aa9.66□□□□□ -0.86
USP3-208ENST00000558285 FSD2A1L4K1 749 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 ADAMTS3O15072 1205 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 ZMYND10O75800 440 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 UPP2O95045 317 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 RB1P06400 928 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 GJB2P29033 226 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 PHKA2P46019 1235 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 RAB27AP51159 221 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 CLCN3P51790 818 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 BTG3Q14201 252 aaPredicted RBP9.65□□□□□ -0.86
USP3-208ENST00000558285 PDIA5Q14554 519 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 GRIN2CQ14957 1233 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 KIZQ2M2Z5 673 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 KRT79Q5XKE5 535 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 FAM117BQ6P1L5 589 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 DTHD1Q6ZMT9 781 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 MYLIPQ8WY64 445 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 ARNTL2Q8WYA1 636 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 HAS1Q92839 578 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 INTS4Q96HW7 963 aaKnown RBP9.65□□□□□ -0.86
USP3-208ENST00000558285 CDK5RAP3Q96JB5 506 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 GUCD1Q96NT3 240 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 MTRQ99707 1265 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 EIF2AK1Q9BQI3 630 aaKnown RBP9.65□□□□□ -0.86
USP3-208ENST00000558285 C11orf84Q9BUA3 381 aaPredicted RBP9.65□□□□□ -0.86
USP3-208ENST00000558285 PLVAPQ9BX97 442 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 TTYH1Q9H313 450 aaPredicted RBP9.65□□□□□ -0.86
USP3-208ENST00000558285 ATP6V0A4Q9HBG4 840 aa9.65□□□□□ -0.86
USP3-208ENST00000558285 YBX2Q9Y2T7 364 aaKnown RBP9.65□□□□□ -0.86
USP3-208ENST00000558285 ENPP3O14638 875 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 SLC26A4O43511 780 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 ZNF862O60290 1169 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 ERLIN2O94905 339 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 VTNP04004 478 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 ATP4AP20648 1035 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 PRPHP41219 470 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 SARSP49591 514 aaKnown RBP9.65□□□□□ -0.87
USP3-208ENST00000558285 DEFB103AP81534 67 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 HTRA4P83105 476 aaPredicted RBP9.65□□□□□ -0.87
USP3-208ENST00000558285 BECN1Q14457 450 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 PPP2R5AQ15172 486 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 TARBP2Q15633 366 aaKnown RBP9.65□□□□□ -0.87
USP3-208ENST00000558285 ZNF174Q15697 407 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 NAALADL2Q58DX5 795 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 SRGAP1Q7Z6B7 1085 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 RHPN2Q8IUC4 686 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 CMTR2Q8IYT2 770 aaKnown RBP9.65□□□□□ -0.87
USP3-208ENST00000558285 SLC17A8Q8NDX2 589 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 FBXO22Q8NEZ5 403 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 DYDC2Q96IM9 177 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 MTMR9Q96QG7 549 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 OSMRQ99650 979 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 POLR3CQ9BUI4 534 aaPredicted RBP9.65□□□□□ -0.87
USP3-208ENST00000558285 PRDM12Q9H4Q4 367 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 ELAC1Q9H777 363 aaKnown RBP9.65□□□□□ -0.87
USP3-208ENST00000558285 LRWD1Q9UFC0 647 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 PRDM4Q9UKN5 801 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 ST3GAL5Q9UNP4 418 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 COL4A3BPQ9Y5P4 624 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 DOCK5Q9H7D0 1870 aa9.65□□□□□ -0.87
USP3-208ENST00000558285 MYH9P35579 1960 aaKnown RBP9.64□□□□□ -0.87
USP3-208ENST00000558285 GOLGA6L3A6NEY3 463 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 ZBTB42B2RXF5 422 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 NCK2O43639 380 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 DARSP14868 501 aaKnown RBP9.64□□□□□ -0.87
USP3-208ENST00000558285 GPC3P51654 580 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 ERVK-21P61565 698 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 CYP4A11Q02928 519 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 TAP1Q03518 808 aa9.64□□□□□ -0.87
USP3-208ENST00000558285 GPNMBQ14956 572 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms