RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 ANTXR2P58335 489 aa6.41□□□□□ -1.38
SCFD1-221ENST00000556534 PCOLCEQ15113 449 aa6.41□□□□□ -1.38
SCFD1-221ENST00000556534 DGKDQ16760 1214 aa6.41□□□□□ -1.38
SCFD1-221ENST00000556534 AGBL4Q5VU57 503 aa6.41□□□□□ -1.38
SCFD1-221ENST00000556534 FRMD7Q6ZUT3 714 aa6.41□□□□□ -1.38
SCFD1-221ENST00000556534 WDR66Q8TBY9 1149 aa6.41□□□□□ -1.38
SCFD1-221ENST00000556534 FERMT2Q96AC1 680 aa6.41□□□□□ -1.38
SCFD1-221ENST00000556534 VTA1Q9NP79 307 aa6.41□□□□□ -1.38
SCFD1-221ENST00000556534 MAGEL2Q9UJ55 1249 aa6.41□□□□□ -1.38
SCFD1-221ENST00000556534 MCM8Q9UJA3 840 aa6.41□□□□□ -1.38
SCFD1-221ENST00000556534 ATP8A1Q9Y2Q0 1164 aa6.41□□□□□ -1.38
SCFD1-221ENST00000556534 PFKMP08237 780 aa6.4□□□□□ -1.38
SCFD1-221ENST00000556534 EPHB4P54760 987 aa6.4□□□□□ -1.38
SCFD1-221ENST00000556534 PDCD1Q15116 288 aa6.4□□□□□ -1.38
SCFD1-221ENST00000556534 TBR1Q16650 682 aa6.4□□□□□ -1.38
SCFD1-221ENST00000556534 ATL2Q8NHH9 583 aa6.4□□□□□ -1.38
SCFD1-221ENST00000556534 COG1Q8WTW3 980 aa6.4□□□□□ -1.38
SCFD1-221ENST00000556534 NKD2Q969F2 451 aaPredicted RBP6.4□□□□□ -1.38
SCFD1-221ENST00000556534 MEGF9Q9H1U4 602 aa6.4□□□□□ -1.38
SCFD1-221ENST00000556534 POLR3BQ9NW08 1133 aaPredicted RBP6.4□□□□□ -1.38
SCFD1-221ENST00000556534 COL4A3BPQ9Y5P4 624 aa6.4□□□□□ -1.38
SCFD1-221ENST00000556534 ST20-MTHFSA0A0A6YYL1 179 aa6.39□□□□□ -1.39
SCFD1-221ENST00000556534 PRSS38A1L453 326 aa6.39□□□□□ -1.39
SCFD1-221ENST00000556534 ANKRD62A6NC57 917 aa6.39□□□□□ -1.39
SCFD1-221ENST00000556534 LAMTOR5O43504 91 aa6.39□□□□□ -1.39
SCFD1-221ENST00000556534 RAB11FIP3O75154 756 aa6.39□□□□□ -1.39
SCFD1-221ENST00000556534 PRKD3O94806 890 aa6.39□□□□□ -1.39
SCFD1-221ENST00000556534 CELA3BP08861 270 aa6.39□□□□□ -1.39
SCFD1-221ENST00000556534 CDKN1CP49918 316 aaPredicted RBP6.39□□□□□ -1.39
SCFD1-221ENST00000556534 MRE11P49959 708 aa6.39□□□□□ -1.39
SCFD1-221ENST00000556534 NFIXQ14938 502 aa6.39□□□□□ -1.39
SCFD1-221ENST00000556534 TBC1D10BQ4KMP7 808 aaPredicted RBP6.39□□□□□ -1.39
SCFD1-221ENST00000556534 ZMAT1Q5H9K5 638 aa6.39□□□□□ -1.39
SCFD1-221ENST00000556534 UBXN11Q5T124 520 aa6.39□□□□□ -1.39
SCFD1-221ENST00000556534 LCE4AQ5TA78 99 aa6.39□□□□□ -1.39
SCFD1-221ENST00000556534 RNF219Q5W0B1 726 aaPredicted RBP6.39□□□□□ -1.39
SCFD1-221ENST00000556534 RTKN2Q8IZC4 609 aa6.39□□□□□ -1.39
SCFD1-221ENST00000556534 GPATCH3Q96I76 525 aa6.39□□□□□ -1.39
SCFD1-221ENST00000556534 DYDC2Q96IM9 177 aa6.39□□□□□ -1.39
SCFD1-221ENST00000556534 OR10A2Q9H208 303 aa6.39□□□□□ -1.39
SCFD1-221ENST00000556534 SAE1Q9UBE0 346 aaPredicted RBP6.39□□□□□ -1.39
SCFD1-221ENST00000556534 TMPRSS11EQ9UL52 423 aa6.39□□□□□ -1.39
SCFD1-221ENST00000556534 VWA7Q9Y334 891 aa6.39□□□□□ -1.39
SCFD1-221ENST00000556534 NOC2LQ9Y3T9 749 aaKnown RBP6.39□□□□□ -1.39
SCFD1-221ENST00000556534 PHLDB1Q86UU1 1377 aa6.39□□□□□ -1.39
SCFD1-221ENST00000556534 B4GALT4O60513 344 aa6.38□□□□□ -1.39
SCFD1-221ENST00000556534 PCDH8O95206 1070 aa6.38□□□□□ -1.39
SCFD1-221ENST00000556534 PLATP00750 562 aa6.38□□□□□ -1.39
SCFD1-221ENST00000556534 CLEC2LP0C7M8 214 aa6.38□□□□□ -1.39
SCFD1-221ENST00000556534 MEOX1P50221 254 aa6.38□□□□□ -1.39
SCFD1-221ENST00000556534 NFYCQ13952 458 aa6.38□□□□□ -1.39
SCFD1-221ENST00000556534 SURF1Q15526 300 aa6.38□□□□□ -1.39
SCFD1-221ENST00000556534 RNF151Q2KHN1 245 aa6.38□□□□□ -1.39
SCFD1-221ENST00000556534 IQSEC1Q6DN90 963 aa6.38□□□□□ -1.39
SCFD1-221ENST00000556534 LYSMD2Q8IV50 215 aa6.38□□□□□ -1.39
SCFD1-221ENST00000556534 WNT8AQ9H1J5 351 aa6.38□□□□□ -1.39
SCFD1-221ENST00000556534 PRDM12Q9H4Q4 367 aa6.38□□□□□ -1.39
SCFD1-221ENST00000556534 PCDH12Q9NPG4 1184 aa6.38□□□□□ -1.39
SCFD1-221ENST00000556534 CTDP1Q9Y5B0 961 aaPredicted RBP6.38□□□□□ -1.39
SCFD1-221ENST00000556534 MYPNQ86TC9 1320 aa6.38□□□□□ -1.39
SCFD1-221ENST00000556534 A0A0A6YYK5 440 aaPredicted RBP6.37□□□□□ -1.39
SCFD1-221ENST00000556534 K7ESF4 209 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 MATN2O00339 956 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 ARHGAP6O43182 974 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 CTSWP56202 376 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 ERVK-21P61565 698 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 PPP2CBP62714 309 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 PPP2CAP67775 309 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 HGFACQ04756 655 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 PITRM1Q5JRX3 1037 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 CCDC62Q6P9F0 684 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 KLHDC10Q6PID8 442 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 ARHGEF18Q6ZSZ5 1173 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 NECAB2Q7Z6G3 386 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 SLC41A1Q8IVJ1 513 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 CFHR4Q92496 578 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 NOL10Q9BSC4 688 aaKnown RBP6.37□□□□□ -1.39
SCFD1-221ENST00000556534 SOX7Q9BT81 388 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 SSBP3Q9BWW4 388 aaPredicted RBP6.37□□□□□ -1.39
SCFD1-221ENST00000556534 ANO3Q9BYT9 981 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 PPP4R1LQ9P1A2 415 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 DNAI1Q9UI46 699 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 PCDHB6Q9Y5E3 794 aa6.37□□□□□ -1.39
SCFD1-221ENST00000556534 CDK11BP21127 795 aaKnown RBP6.36□□□□□ -1.39
SCFD1-221ENST00000556534 ADAM15Q13444 863 aa6.36□□□□□ -1.39
SCFD1-221ENST00000556534 PTPROQ16827 1216 aa6.36□□□□□ -1.39
SCFD1-221ENST00000556534 ZNF568Q3ZCX4 644 aa6.36□□□□□ -1.39
SCFD1-221ENST00000556534 USP30Q70CQ3 517 aa6.36□□□□□ -1.39
SCFD1-221ENST00000556534 CMIPQ8IY22 773 aa6.36□□□□□ -1.39
SCFD1-221ENST00000556534 CDYL2Q8N8U2 506 aa6.36□□□□□ -1.39
SCFD1-221ENST00000556534 PRPF38AQ8NAV1 312 aaKnown RBP6.36□□□□□ -1.39
SCFD1-221ENST00000556534 CXorf38Q8TB03 319 aa6.36□□□□□ -1.39
SCFD1-221ENST00000556534 WDR92Q96MX6 357 aa6.36□□□□□ -1.39
SCFD1-221ENST00000556534 ACAP3Q96P50 834 aa6.36□□□□□ -1.39
SCFD1-221ENST00000556534 PTPN18Q99952 460 aa6.36□□□□□ -1.39
SCFD1-221ENST00000556534 BDH2Q9BUT1 245 aa6.36□□□□□ -1.39
SCFD1-221ENST00000556534 BRINP2Q9C0B6 783 aa6.36□□□□□ -1.39
SCFD1-221ENST00000556534 SEC61A2Q9H9S3 476 aa6.36□□□□□ -1.39
SCFD1-221ENST00000556534 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.36□□□□□ -1.39
SCFD1-221ENST00000556534 NR2E1Q9Y466 385 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms