RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 GJA9P57773 515 aa11.27□□□□□ -0.6
SRP54-208ENST00000555557 KIAA0753Q2KHM9 967 aa11.27□□□□□ -0.6
SRP54-208ENST00000555557 BRDTQ58F21 947 aaPredicted RBP11.27□□□□□ -0.6
SRP54-208ENST00000555557 ANKRD40Q6AI12 368 aa11.27□□□□□ -0.6
SRP54-208ENST00000555557 ZNF720Q7Z2F6 126 aa11.27□□□□□ -0.6
SRP54-208ENST00000555557 GUF1Q8N442 669 aaKnown RBP11.27□□□□□ -0.6
SRP54-208ENST00000555557 SLAIN1Q8ND83 568 aa11.27□□□□□ -0.6
SRP54-208ENST00000555557 MCPH1Q8NEM0 835 aa11.27□□□□□ -0.6
SRP54-208ENST00000555557 DHTKD1Q96HY7 919 aaPredicted RBP11.27□□□□□ -0.6
SRP54-208ENST00000555557 TIPINQ9BVW5 301 aa11.27□□□□□ -0.6
SRP54-208ENST00000555557 POLR3FQ9H1D9 316 aaPredicted RBP11.27□□□□□ -0.6
SRP54-208ENST00000555557 IKZF4Q9H2S9 585 aa11.27□□□□□ -0.6
SRP54-208ENST00000555557 XPNPEP3Q9NQH7 507 aa11.27□□□□□ -0.6
SRP54-208ENST00000555557 OLFML3Q9NRN5 406 aa11.27□□□□□ -0.6
SRP54-208ENST00000555557 SAMSN1Q9NSI8 373 aaKnown RBP11.27□□□□□ -0.6
SRP54-208ENST00000555557 LARSQ9P2J5 1176 aaKnown RBP11.27□□□□□ -0.6
SRP54-208ENST00000555557 RWDD2AQ9UIY3 292 aa11.27□□□□□ -0.6
SRP54-208ENST00000555557 CASP8AP2Q9UKL3 1982 aa11.27□□□□□ -0.61
SRP54-208ENST00000555557 IKBKBO14920 756 aa11.27□□□□□ -0.61
SRP54-208ENST00000555557 SLC16A4O15374 487 aa11.27□□□□□ -0.61
SRP54-208ENST00000555557 F2P00734 622 aa11.27□□□□□ -0.61
SRP54-208ENST00000555557 HSPA8P11142 646 aaKnown RBP11.27□□□□□ -0.61
SRP54-208ENST00000555557 HOXD13P35453 343 aa11.27□□□□□ -0.61
SRP54-208ENST00000555557 RFC5P40937 340 aa11.27□□□□□ -0.61
SRP54-208ENST00000555557 PRMT2P55345 433 aa11.27□□□□□ -0.61
SRP54-208ENST00000555557 MKRN4PQ13434 485 aaPredicted RBP11.27□□□□□ -0.61
SRP54-208ENST00000555557 COBLL1Q53SF7 1204 aa11.27□□□□□ -0.61
SRP54-208ENST00000555557 CT47A1Q5JQC4 288 aaPredicted RBP11.27□□□□□ -0.61
SRP54-208ENST00000555557 EPM2AIP1Q7L775 607 aaPredicted RBP11.27□□□□□ -0.61
SRP54-208ENST00000555557 ASAP3Q8TDY4 903 aa11.27□□□□□ -0.61
SRP54-208ENST00000555557 KIFAP3Q92845 792 aa11.27□□□□□ -0.61
SRP54-208ENST00000555557 P2RX5Q93086 422 aa11.27□□□□□ -0.61
SRP54-208ENST00000555557 SETD4Q9NVD3 440 aa11.27□□□□□ -0.61
SRP54-208ENST00000555557 SEL1LQ9UBV2 794 aa11.27□□□□□ -0.61
SRP54-208ENST00000555557 K7ENM7 598 aa11.26□□□□□ -0.61
SRP54-208ENST00000555557 ADAMTS4O75173 837 aa11.26□□□□□ -0.61
SRP54-208ENST00000555557 GJB1P08034 283 aa11.26□□□□□ -0.61
SRP54-208ENST00000555557 ATP1A3P13637 1013 aa11.26□□□□□ -0.61
SRP54-208ENST00000555557 CCNE1P24864 410 aa11.26□□□□□ -0.61
SRP54-208ENST00000555557 KLRC1P26715 233 aa11.26□□□□□ -0.61
SRP54-208ENST00000555557 NPTX2P47972 431 aa11.26□□□□□ -0.61
SRP54-208ENST00000555557 CLCN3P51790 818 aa11.26□□□□□ -0.61
SRP54-208ENST00000555557 PURAQ00577 322 aaKnown RBP11.26□□□□□ -0.61
SRP54-208ENST00000555557 PPFIA1Q13136 1202 aa11.26□□□□□ -0.61
SRP54-208ENST00000555557 MFSD10Q14728 455 aa11.26□□□□□ -0.61
SRP54-208ENST00000555557 UVSSAQ2YD98 709 aa11.26□□□□□ -0.61
SRP54-208ENST00000555557 SPATA1Q5VX52 437 aa11.26□□□□□ -0.61
SRP54-208ENST00000555557 CENPPQ6IPU0 288 aa11.26□□□□□ -0.61
SRP54-208ENST00000555557 EFCAB12Q6NXP0 572 aa11.26□□□□□ -0.61
SRP54-208ENST00000555557 TTI2Q6NXR4 508 aa11.26□□□□□ -0.61
SRP54-208ENST00000555557 CXCL17Q6UXB2 119 aa11.26□□□□□ -0.61
SRP54-208ENST00000555557 METTL13Q8N6R0 699 aa11.26□□□□□ -0.61
SRP54-208ENST00000555557 ZNF668Q96K58 619 aaPredicted RBP11.26□□□□□ -0.61
SRP54-208ENST00000555557 DUSP9Q99956 384 aaKnown RBP11.26□□□□□ -0.61
SRP54-208ENST00000555557 GTPBP4Q9BZE4 634 aaKnown RBP11.26□□□□□ -0.61
SRP54-208ENST00000555557 SPC25Q9HBM1 224 aa11.26□□□□□ -0.61
SRP54-208ENST00000555557 DDX20Q9UHI6 824 aaKnown RBP11.26□□□□□ -0.61
SRP54-208ENST00000555557 PTPN22Q9Y2R2 807 aa11.26□□□□□ -0.61
SRP54-208ENST00000555557 IGKV6-21A0A0C4DH24 114 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 C22orf31O95567 290 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 GLRA2P23416 452 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 ARL2P36404 184 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 CTCFP49711 727 aaPredicted RBP11.25□□□□□ -0.61
SRP54-208ENST00000555557 PSEN2P49810 448 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 DMP1Q13316 513 aaPredicted RBP11.25□□□□□ -0.61
SRP54-208ENST00000555557 HIC1Q14526 733 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 GRIK4Q16099 956 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 TPD52L1Q16890 204 aaPredicted RBP11.25□□□□□ -0.61
SRP54-208ENST00000555557 ZNF484Q5JVG2 852 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 MARCH8Q5T0T0 291 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 ZNF507Q8TCN5 953 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 PRPF31Q8WWY3 499 aaKnown RBP11.25□□□□□ -0.61
SRP54-208ENST00000555557 UPF3AQ9H1J1 476 aaKnown RBP11.25□□□□□ -0.61
SRP54-208ENST00000555557 KCTD10Q9H3F6 313 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 HMX1Q9NP08 348 aaPredicted RBP11.25□□□□□ -0.61
SRP54-208ENST00000555557 ADGRA3Q8IWK6 1321 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 SMIM10L2AP0DMW4 78 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 SMIM10L2BP0DMW5 78 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 PPP1R2P41236 205 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 KCNA10Q16322 511 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 KNOP1Q1ED39 458 aaKnown RBP11.25□□□□□ -0.61
SRP54-208ENST00000555557 LHX8Q68G74 356 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 MTHFD1LQ6UB35 978 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 HAUS6Q7Z4H7 955 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 CREBRFQ8IUR6 639 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 TMEM161BQ8NDZ6 487 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 STRA6Q9BX79 667 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 SRRTQ9BXP5 876 aaKnown RBP11.25□□□□□ -0.61
SRP54-208ENST00000555557 KMT5AQ9NQR1 393 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 PCDHB13Q9Y5F0 798 aa11.25□□□□□ -0.61
SRP54-208ENST00000555557 LOXHD1Q8IVV2 1947 aa11.24□□□□□ -0.61
SRP54-208ENST00000555557 BICDL2A1A5D9 508 aa11.24□□□□□ -0.61
SRP54-208ENST00000555557 RBAK-RBAKDNI3L0D1 243 aa11.24□□□□□ -0.61
SRP54-208ENST00000555557 HAS3O00219 553 aa11.24□□□□□ -0.61
SRP54-208ENST00000555557 PPP1R37O75864 691 aa11.24□□□□□ -0.61
SRP54-208ENST00000555557 ASGR1P07306 291 aa11.24□□□□□ -0.61
SRP54-208ENST00000555557 SMTNP53814 917 aa11.24□□□□□ -0.61
SRP54-208ENST00000555557 NCKAP1LP55160 1127 aa11.24□□□□□ -0.61
SRP54-208ENST00000555557 ZNF200P98182 395 aaPredicted RBP11.24□□□□□ -0.61
SRP54-208ENST00000555557 RHPN2Q8IUC4 686 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms