RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 NEK9Q8TD19 979 aa22.93■■□□□ 1.26
VTI1B-205ENST00000555543 NLRP7Q8WX94 980 aa22.93■■□□□ 1.26
VTI1B-205ENST00000555543 SCLT1Q96NL6 688 aa22.93■■□□□ 1.26
VTI1B-205ENST00000555543 SUCLA2Q9P2R7 463 aaPredicted RBP22.93■■□□□ 1.26
VTI1B-205ENST00000555543 SMC3Q9UQE7 1217 aa22.93■■□□□ 1.26
VTI1B-205ENST00000555543 PCDHB6Q9Y5E3 794 aa22.93■■□□□ 1.26
VTI1B-205ENST00000555543 PRRC2BQ5JSZ5 2229 aaKnown RBP22.93■■□□□ 1.26
VTI1B-205ENST00000555543 SPTBN5Q9NRC6 3674 aaKnown RBP22.93■■□□□ 1.26
VTI1B-205ENST00000555543 DENND3A2RUS2 1198 aa22.92■■□□□ 1.26
VTI1B-205ENST00000555543 DGKIO75912 1065 aa22.92■■□□□ 1.26
VTI1B-205ENST00000555543 LINC00271P0C7V0 271 aa22.92■■□□□ 1.26
VTI1B-205ENST00000555543 IBSPP21815 317 aaPredicted RBP22.92■■□□□ 1.26
VTI1B-205ENST00000555543 DNM2P50570 870 aa22.92■■□□□ 1.26
VTI1B-205ENST00000555543 POLGP54098 1239 aaPredicted RBP22.92■■□□□ 1.26
VTI1B-205ENST00000555543 CCDC85BQ15834 202 aaPredicted RBP22.92■■□□□ 1.26
VTI1B-205ENST00000555543 XKR9Q5GH70 373 aa22.92■■□□□ 1.26
VTI1B-205ENST00000555543 ODR4Q5SWX8 454 aa22.92■■□□□ 1.26
VTI1B-205ENST00000555543 MCTP1Q6DN14 999 aa22.92■■□□□ 1.26
VTI1B-205ENST00000555543 KSR1Q8IVT5 923 aa22.92■■□□□ 1.26
VTI1B-205ENST00000555543 ZNF710Q8N1W2 664 aa22.92■■□□□ 1.26
VTI1B-205ENST00000555543 MICALL1Q8N3F8 863 aa22.92■■□□□ 1.26
VTI1B-205ENST00000555543 SLC7A3Q8WY07 619 aa22.92■■□□□ 1.26
VTI1B-205ENST00000555543 RGS18Q9NS28 235 aa22.92■■□□□ 1.26
VTI1B-205ENST00000555543 PPME1Q9Y570 386 aa22.92■■□□□ 1.26
VTI1B-205ENST00000555543 NLRC5Q86WI3 1866 aa22.92■■□□□ 1.26
VTI1B-205ENST00000555543 A0A087WZ62 844 aa22.91■■□□□ 1.26
VTI1B-205ENST00000555543 C9IYK1 514 aa22.91■■□□□ 1.26
VTI1B-205ENST00000555543 SPATA31C1P0DKV0 1188 aa22.91■■□□□ 1.26
VTI1B-205ENST00000555543 POU3F3P20264 500 aaPredicted RBP22.91■■□□□ 1.26
VTI1B-205ENST00000555543 RFC5P40937 340 aa22.91■■□□□ 1.26
VTI1B-205ENST00000555543 TECP42680 631 aa22.91■■□□□ 1.26
VTI1B-205ENST00000555543 SARSP49591 514 aaKnown RBP22.91■■□□□ 1.26
VTI1B-205ENST00000555543 GATMP50440 423 aa22.91■■□□□ 1.26
VTI1B-205ENST00000555543 CUL4AQ13619 759 aa22.91■■□□□ 1.26
VTI1B-205ENST00000555543 EMC2Q15006 297 aa22.91■■□□□ 1.26
VTI1B-205ENST00000555543 EPC2Q52LR7 807 aa22.91■■□□□ 1.26
VTI1B-205ENST00000555543 OTUD6AQ7L8S5 288 aa22.91■■□□□ 1.26
VTI1B-205ENST00000555543 RHPN2Q8IUC4 686 aa22.91■■□□□ 1.26
VTI1B-205ENST00000555543 PHF6Q8IWS0 365 aaKnown RBP eCLIP22.91■■□□□ 1.26
VTI1B-205ENST00000555543 FBXO22Q8NEZ5 403 aa22.91■■□□□ 1.26
VTI1B-205ENST00000555543 TMEM143Q96AN5 459 aa22.91■■□□□ 1.26
VTI1B-205ENST00000555543 JPH2Q9BR39 696 aaPredicted RBP22.91■■□□□ 1.26
VTI1B-205ENST00000555543 FDXACB1Q9BRP7 624 aaPredicted RBP22.91■■□□□ 1.26
VTI1B-205ENST00000555543 PRDM6Q9NQX0 595 aa22.91■■□□□ 1.26
VTI1B-205ENST00000555543 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.91■■□□□ 1.26
VTI1B-205ENST00000555543 A0A087WWV3 80 aa22.9■■□□□ 1.26
VTI1B-205ENST00000555543 MED24O75448 989 aa22.9■■□□□ 1.26
VTI1B-205ENST00000555543 FIBCD1Q8N539 461 aa22.9■■□□□ 1.26
VTI1B-205ENST00000555543 XPNPEP1Q9NQW7 623 aa22.9■■□□□ 1.26
VTI1B-205ENST00000555543 C1orf112Q9NSG2 853 aa22.9■■□□□ 1.26
VTI1B-205ENST00000555543 RALGAPA2Q2PPJ7 1873 aa22.9■■□□□ 1.26
VTI1B-205ENST00000555543 H3BQV1 296 aa22.89■■□□□ 1.25
VTI1B-205ENST00000555543 GTPBP6O43824 516 aaPredicted RBP22.89■■□□□ 1.25
VTI1B-205ENST00000555543 BTG3Q14201 252 aaPredicted RBP22.89■■□□□ 1.25
VTI1B-205ENST00000555543 FAM43BQ6ZT52 329 aaPredicted RBP22.89■■□□□ 1.25
VTI1B-205ENST00000555543 SLC24A5Q71RS6 500 aa22.89■■□□□ 1.25
VTI1B-205ENST00000555543 ZNF410Q86VK4 478 aa22.89■■□□□ 1.25
VTI1B-205ENST00000555543 CATSPER3Q86XQ3 398 aa22.89■■□□□ 1.25
VTI1B-205ENST00000555543 TMEM192Q8IY95 271 aa22.89■■□□□ 1.25
VTI1B-205ENST00000555543 PIGOQ8TEQ8 1089 aa22.89■■□□□ 1.25
VTI1B-205ENST00000555543 NLRP4Q96MN2 994 aa22.89■■□□□ 1.25
VTI1B-205ENST00000555543 GCOM2Q9BZD3 368 aaPredicted RBP22.89■■□□□ 1.25
VTI1B-205ENST00000555543 COL4A3BPQ9Y5P4 624 aa22.89■■□□□ 1.25
VTI1B-205ENST00000555543 STAG3L1P0CL83 205 aa22.88■■□□□ 1.25
VTI1B-205ENST00000555543 PTGDRQ13258 359 aa22.88■■□□□ 1.25
VTI1B-205ENST00000555543 PAN2Q504Q3 1202 aaKnown RBP22.88■■□□□ 1.25
VTI1B-205ENST00000555543 PRPF31Q8WWY3 499 aaKnown RBP22.88■■□□□ 1.25
VTI1B-205ENST00000555543 SAMD11Q96NU1 681 aa22.88■■□□□ 1.25
VTI1B-205ENST00000555543 IFT122Q9HBG6 1241 aa22.88■■□□□ 1.25
VTI1B-205ENST00000555543 TUFT1Q9NNX1 390 aa22.88■■□□□ 1.25
VTI1B-205ENST00000555543 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.88■■□□□ 1.25
VTI1B-205ENST00000555543 ANKEF1Q9NU02 776 aa22.88■■□□□ 1.25
VTI1B-205ENST00000555543 LRFN2Q9ULH4 789 aa22.88■■□□□ 1.25
VTI1B-205ENST00000555543 KIAA1671Q9BY89 1806 aa22.87■■□□□ 1.25
VTI1B-205ENST00000555543 XIRP2A4UGR9 3374 aa22.87■■□□□ 1.25
VTI1B-205ENST00000555543 RARRES1P49788 294 aa22.87■■□□□ 1.25
VTI1B-205ENST00000555543 FXR2P51116 673 aaKnown RBP eCLIP22.87■■□□□ 1.25
VTI1B-205ENST00000555543 FAM189BP81408 668 aa22.87■■□□□ 1.25
VTI1B-205ENST00000555543 CDC42EP1Q00587 391 aa22.87■■□□□ 1.25
VTI1B-205ENST00000555543 POTEGQ6S5H5 508 aa22.87■■□□□ 1.25
VTI1B-205ENST00000555543 EXOC8Q8IYI6 725 aa22.87■■□□□ 1.25
VTI1B-205ENST00000555543 CMTR2Q8IYT2 770 aaKnown RBP22.87■■□□□ 1.25
VTI1B-205ENST00000555543 PSPC1Q8WXF1 523 aaKnown RBP22.87■■□□□ 1.25
VTI1B-205ENST00000555543 CLP1Q92989 425 aaKnown RBP22.87■■□□□ 1.25
VTI1B-205ENST00000555543 MTRQ99707 1265 aa22.87■■□□□ 1.25
VTI1B-205ENST00000555543 POLR3CQ9BUI4 534 aaPredicted RBP22.87■■□□□ 1.25
VTI1B-205ENST00000555543 PCDHB7Q9Y5E2 793 aa22.87■■□□□ 1.25
VTI1B-205ENST00000555543 MRPL42Q9Y6G3 142 aaKnown RBP22.87■■□□□ 1.25
VTI1B-205ENST00000555543 GAS2O43903 313 aaKnown RBP22.86■■□□□ 1.25
VTI1B-205ENST00000555543 CTNNB1P35222 781 aa22.86■■□□□ 1.25
VTI1B-205ENST00000555543 LAMTOR4Q0VGL1 99 aa22.86■■□□□ 1.25
VTI1B-205ENST00000555543 FAM102BQ5T8I3 360 aa22.86■■□□□ 1.25
VTI1B-205ENST00000555543 LARP1BQ659C4 914 aaKnown RBP22.86■■□□□ 1.25
VTI1B-205ENST00000555543 VCANP13611 3396 aa22.86■■□□□ 1.25
VTI1B-205ENST00000555543 FGFR1P11362 822 aa22.85■■□□□ 1.25
VTI1B-205ENST00000555543 RPA1P27694 616 aa22.85■■□□□ 1.25
VTI1B-205ENST00000555543 IL17AQ16552 155 aa22.85■■□□□ 1.25
VTI1B-205ENST00000555543 FERMT3Q86UX7 667 aa22.85■■□□□ 1.25
VTI1B-205ENST00000555543 ERMNQ8TAM6 284 aa22.85■■□□□ 1.25
VTI1B-205ENST00000555543 TCP11Q8WWU5 503 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms