RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 COL13A1Q5TAT6 717 aaPredicted RBP11.92□□□□□ -0.5
TDP1-211ENST00000555178 ZNF658Q5TYW1 1059 aaPredicted RBP11.92□□□□□ -0.5
TDP1-211ENST00000555178 OTUD6AQ7L8S5 288 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 RNF180Q86T96 592 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 DHX40Q8IX18 779 aaKnown RBP11.92□□□□□ -0.5
TDP1-211ENST00000555178 AOPEPQ8N6M6 819 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 TRIML1Q8N9V2 468 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 FAM200AQ8TCP9 573 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 OSBPL7Q9BZF2 842 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 CRISPLD2Q9H0B8 497 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 SPC25Q9HBM1 224 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 PCDHA2Q9Y5H9 948 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 ADGRA3Q8IWK6 1321 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 IGKV6-21A0A0C4DH24 114 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 MAFO75444 373 aaPredicted RBP11.92□□□□□ -0.5
TDP1-211ENST00000555178 NMT1P30419 496 aaKnown RBP11.92□□□□□ -0.5
TDP1-211ENST00000555178 POLGP54098 1239 aaPredicted RBP11.92□□□□□ -0.5
TDP1-211ENST00000555178 STX17P56962 302 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 KCNA1Q09470 495 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 TMEM62Q0P6H9 643 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 IQCB1Q15051 598 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 HERC4Q5GLZ8 1057 aaPredicted RBP11.92□□□□□ -0.5
TDP1-211ENST00000555178 FAM102BQ5T8I3 360 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 MTHFD1LQ6UB35 978 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 LINC01465Q8N7H1 131 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 RMND1Q9NWS8 449 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 ZNF215Q9UL58 517 aaPredicted RBP11.92□□□□□ -0.5
TDP1-211ENST00000555178 CTNND2Q9UQB3 1225 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 PVALEFA0A1B0GWK0 134 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 MSCO60682 206 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 TFRCP02786 760 aaKnown RBP11.91□□□□□ -0.5
TDP1-211ENST00000555178 GUCY2CP25092 1073 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 HOXC8P31273 242 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 SLC26A2P50443 739 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 PMS1P54277 932 aaKnown RBP11.91□□□□□ -0.5
TDP1-211ENST00000555178 FAM47CQ5HY64 1035 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 EFCAB12Q6NXP0 572 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 KCTD17Q8N5Z5 321 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 VTI1AQ96AJ9 217 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 LRRC27Q9C0I9 530 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 POLR3FQ9H1D9 316 aaPredicted RBP11.91□□□□□ -0.5
TDP1-211ENST00000555178 GRPEL1Q9HAV7 217 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 CDHR5Q9HBB8 845 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 TRMT13Q9NUP7 481 aaKnown RBP11.91□□□□□ -0.5
TDP1-211ENST00000555178 TRIM49BA6NDI0 452 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 DKC1O60832 514 aaKnown RBP eCLIP11.91□□□□□ -0.5
TDP1-211ENST00000555178 TBCAO75347 108 aaKnown RBP11.91□□□□□ -0.5
TDP1-211ENST00000555178 CSDE1O75534 798 aaKnown RBP11.91□□□□□ -0.5
TDP1-211ENST00000555178 VTNP04004 478 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 EDN1P05305 212 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 GLRA2P23416 452 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 TBC1D8BQ0IIM8 1120 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 ITGA7Q13683 1181 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 ZC2HC1CQ53FD0 456 aaPredicted RBP11.91□□□□□ -0.5
TDP1-211ENST00000555178 BRDTQ58F21 947 aaPredicted RBP11.91□□□□□ -0.5
TDP1-211ENST00000555178 HSP90AA4PQ58FG1 418 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 FAM26FQ5R3K3 315 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 CCDC65Q8IXS2 484 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 METTL13Q8N6R0 699 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 FAM167AQ96KS9 214 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 TRPV6Q9H1D0 765 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 PHF24Q9UPV7 400 aa11.91□□□□□ -0.5
TDP1-211ENST00000555178 SCN5AQ14524 2016 aa11.9□□□□□ -0.5
TDP1-211ENST00000555178 DGAT1O75907 488 aa11.9□□□□□ -0.5
TDP1-211ENST00000555178 FAM13AO94988 1023 aa11.9□□□□□ -0.5
TDP1-211ENST00000555178 MYBP10242 640 aa11.9□□□□□ -0.5
TDP1-211ENST00000555178 EN2P19622 333 aaPredicted RBP11.9□□□□□ -0.5
TDP1-211ENST00000555178 HOXD13P35453 343 aa11.9□□□□□ -0.5
TDP1-211ENST00000555178 ARL2P36404 184 aa11.9□□□□□ -0.5
TDP1-211ENST00000555178 ZNF131P52739 623 aa11.9□□□□□ -0.5
TDP1-211ENST00000555178 ATN1P54259 1190 aaPredicted RBP11.9□□□□□ -0.5
TDP1-211ENST00000555178 NCAPHQ15003 741 aa11.9□□□□□ -0.5
TDP1-211ENST00000555178 ZNF484Q5JVG2 852 aa11.9□□□□□ -0.5
TDP1-211ENST00000555178 KIAA0319LQ8IZA0 1049 aa11.9□□□□□ -0.5
TDP1-211ENST00000555178 ADSSL1Q8N142 457 aa11.9□□□□□ -0.5
TDP1-211ENST00000555178 MYCT1Q8N699 235 aa11.9□□□□□ -0.5
TDP1-211ENST00000555178 MLKLQ8NB16 471 aa11.9□□□□□ -0.5
TDP1-211ENST00000555178 PCSK9Q8NBP7 692 aaKnown RBP11.9□□□□□ -0.5
TDP1-211ENST00000555178 PRPF31Q8WWY3 499 aaKnown RBP11.9□□□□□ -0.5
TDP1-211ENST00000555178 FAM49AQ9H0Q0 323 aaPredicted RBP11.9□□□□□ -0.5
TDP1-211ENST00000555178 ATP6V0A4Q9HBG4 840 aa11.9□□□□□ -0.5
TDP1-211ENST00000555178 GTF2IRD1Q9UHL9 959 aa11.9□□□□□ -0.5
TDP1-211ENST00000555178 GJA8P48165 433 aa11.9□□□□□ -0.51
TDP1-211ENST00000555178 PEX3P56589 373 aa11.9□□□□□ -0.51
TDP1-211ENST00000555178 NFRKBQ6P4R8 1299 aa11.9□□□□□ -0.51
TDP1-211ENST00000555178 C7orf31Q8N865 590 aa11.9□□□□□ -0.51
TDP1-211ENST00000555178 ARRDC4Q8NCT1 418 aa11.9□□□□□ -0.51
TDP1-211ENST00000555178 DNAJB3Q8WWF6 145 aa11.9□□□□□ -0.51
TDP1-211ENST00000555178 EEF2KMTQ96G04 330 aa11.9□□□□□ -0.51
TDP1-211ENST00000555178 SENP6Q9GZR1 1112 aaPredicted RBP11.9□□□□□ -0.51
TDP1-211ENST00000555178 PARVGQ9HBI0 331 aa11.9□□□□□ -0.51
TDP1-211ENST00000555178 LAMA2P24043 3122 aaKnown RBP11.9□□□□□ -0.51
TDP1-211ENST00000555178 MBLAC1A4D2B0 266 aaPredicted RBP11.89□□□□□ -0.51
TDP1-211ENST00000555178 TTLL13PA6NNM8 815 aa11.89□□□□□ -0.51
TDP1-211ENST00000555178 DNM1LO00429 736 aa11.89□□□□□ -0.51
TDP1-211ENST00000555178 SLC16A4O15374 487 aa11.89□□□□□ -0.51
TDP1-211ENST00000555178 AP5Z1O43299 807 aa11.89□□□□□ -0.51
TDP1-211ENST00000555178 CAPSQ13938 189 aa11.89□□□□□ -0.51
TDP1-211ENST00000555178 ODR4Q5SWX8 454 aa11.89□□□□□ -0.51
TDP1-211ENST00000555178 TAS1R3Q7RTX0 852 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms