RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 ACTRT1Q8TDG2 376 aa10.29□□□□□ -0.76
SIX4-202ENST00000554079 CKAP2Q8WWK9 683 aa10.29□□□□□ -0.76
SIX4-202ENST00000554079 NMD3Q96D46 503 aaKnown RBP10.29□□□□□ -0.76
SIX4-202ENST00000554079 TUBGCP2Q9BSJ2 902 aa10.29□□□□□ -0.76
SIX4-202ENST00000554079 DDX47Q9H0S4 455 aaKnown RBP10.29□□□□□ -0.76
SIX4-202ENST00000554079 PABPC3Q9H361 631 aaKnown RBP10.29□□□□□ -0.76
SIX4-202ENST00000554079 NPHP3-ACAD11A0A0J9YXS1 232 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 MAP3K7O43318 606 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 STRNO43815 780 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 TBX10O75333 385 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 PSMG1O95456 288 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 XBP1P17861 261 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 NFKBIAP25963 317 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 RGS2P41220 211 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 USP11P51784 963 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 POLGP54098 1239 aaPredicted RBP10.28□□□□□ -0.76
SIX4-202ENST00000554079 HAND2P61296 217 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 CYLC2Q14093 348 aaPredicted RBP10.28□□□□□ -0.76
SIX4-202ENST00000554079 LRRC14Q15048 493 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.28□□□□□ -0.76
SIX4-202ENST00000554079 EAPPQ56P03 285 aaPredicted RBP10.28□□□□□ -0.76
SIX4-202ENST00000554079 MIIPQ5JXC2 388 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 C6orf118Q5T5N4 469 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 UNC13DQ70J99 1090 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 HS2ST1Q7LGA3 356 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 ANKLE2Q86XL3 938 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 TREML1Q86YW5 311 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 ERP27Q96DN0 273 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 DYDC2Q96IM9 177 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 NAP1L3Q99457 506 aaPredicted RBP10.28□□□□□ -0.76
SIX4-202ENST00000554079 FMO2Q99518 471 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 FOXP1Q9H334 677 aaPredicted RBP10.28□□□□□ -0.76
SIX4-202ENST00000554079 SLITRK6Q9H5Y7 841 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 METTL5Q9NRN9 209 aaKnown RBP10.28□□□□□ -0.76
SIX4-202ENST00000554079 FAM217BQ9NTX9 383 aaPredicted RBP10.28□□□□□ -0.76
SIX4-202ENST00000554079 BTBD7Q9P203 1132 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 STX18Q9P2W9 335 aaKnown RBP10.28□□□□□ -0.76
SIX4-202ENST00000554079 CHKBQ9Y259 395 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 ZNF711Q9Y462 761 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 TIMM22Q9Y584 194 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 AFDNP55196 1824 aaKnown RBP10.28□□□□□ -0.76
SIX4-202ENST00000554079 TLDC2A0PJX2 215 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 CAPN9O14815 690 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 EPHB6O15197 1021 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 LDHAP00338 332 aaKnown RBP10.28□□□□□ -0.76
SIX4-202ENST00000554079 COL6A2P12110 1019 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 RXRAP19793 462 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 MARK3P27448 753 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 GTF2H1P32780 548 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 YARSP54577 528 aaKnown RBP10.28□□□□□ -0.76
SIX4-202ENST00000554079 MAP3K10Q02779 954 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 CYP4A11Q02928 519 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 EHHADHQ08426 723 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 MKRN3Q13064 507 aaKnown RBP10.28□□□□□ -0.76
SIX4-202ENST00000554079 CAMK2BQ13554 666 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 DCTN2Q13561 401 aaKnown RBP10.28□□□□□ -0.76
SIX4-202ENST00000554079 MTFR1Q15390 333 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 NAB2Q15742 525 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 KCTD19Q17RG1 926 aaPredicted RBP10.28□□□□□ -0.76
SIX4-202ENST00000554079 ZCWPW2Q504Y3 356 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 PDCD4Q53EL6 469 aaKnown RBP10.28□□□□□ -0.76
SIX4-202ENST00000554079 ACSBG2Q5FVE4 666 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 DENND2CQ68D51 928 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 NEPROQ6NW34 567 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 BTNL9Q6UXG8 535 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 Q6ZNX1 250 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 USP31Q70CQ4 1352 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 VSIG1Q86XK7 387 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 PPFIBP2Q8ND30 876 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 DBNDD2Q9BQY9 259 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 TCHPQ9BT92 498 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 ZMYND12Q9H0C1 365 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 TIMMDC1Q9NPL8 285 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 NLRC4Q9NPP4 1024 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 ZDHHC18Q9NUE0 388 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 ZNF212Q9UDV6 495 aa10.28□□□□□ -0.76
SIX4-202ENST00000554079 TDRKHQ9Y2W6 561 aaKnown RBP10.28□□□□□ -0.76
SIX4-202ENST00000554079 MYH3P11055 1940 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 STRCQ7RTU9 1775 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 NCKAP5LQ9HCH0 1330 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 SMIM23A6NLE4 172 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 CCDC188H7C350 402 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 TTI1O43156 1089 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 RNASEH1O60930 286 aaKnown RBP10.27□□□□□ -0.77
SIX4-202ENST00000554079 OR6B1O95007 311 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 RPN1P04843 607 aaKnown RBP10.27□□□□□ -0.77
SIX4-202ENST00000554079 CPA3P15088 417 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 STIP1P31948 543 aaKnown RBP10.27□□□□□ -0.77
SIX4-202ENST00000554079 NEK2P51955 445 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 ARFIP2P53365 341 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 PMS2P54278 862 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 POU5F1Q01860 360 aaKnown RBP10.27□□□□□ -0.77
SIX4-202ENST00000554079 GFPT1Q06210 699 aaPredicted RBP10.27□□□□□ -0.77
SIX4-202ENST00000554079 KCNMA1Q12791 1236 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 UBAP2Q5T6F2 1119 aaKnown RBP10.27□□□□□ -0.77
SIX4-202ENST00000554079 TTI2Q6NXR4 508 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 KLHL35Q6PF15 583 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 APOA5Q6Q788 366 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 VSTM1Q6UX27 236 aa10.27□□□□□ -0.77
SIX4-202ENST00000554079 DSTYKQ6XUX3 929 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms