RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	MME	P08473	750 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	PHKA2	P46019	1235 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	PDE1C	Q14123	709 aa	Predicted RBP	12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	GDAP1	Q8TB36	358 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	NSUN6	Q8TEA1	469 aa	Known RBP	12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	RMDN3	Q96TC7	470 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	UPF3A	Q9H1J1	476 aa	Known RBP	12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	TMEM60	Q9H2L4	133 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	TULP4	Q9NRJ4	1543 aa		12.35	□□□□□ -0.43
SYNE2-208	ENST00000553289	CDC42BPB	Q9Y5S2	1711 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	COPE	O14579	308 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	SCARA5	Q6ZMJ2	495 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	OXER1	Q8TDS5	423 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	PIGO	Q8TEQ8	1089 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	OSBPL9	Q96SU4	736 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	WNT8A	Q9H1J5	351 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	GSG1L2	A8MUP6	293 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	SPECC1L-ADORA2A	F8WAN1	911 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	CDC27	P30260	824 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	TERF2	Q15554	542 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	TXNRD1	Q16881	649 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	SYT2	Q8N9I0	419 aa	Predicted RBP	12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	CHD1	O14646	1710 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	TARSL2	A2RTX5	802 aa	Known RBP	12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	FOXP2	O15409	715 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	CTIF	O43310	598 aa	Known RBP	12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	QARS	P47897	775 aa	Known RBP	12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	PAPOLA	P51003	745 aa	Known RBP	12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	VAMP7	P51809	220 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	ARID5B	Q14865	1188 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	TAF11	Q15544	211 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	MIGA2	Q7L4E1	593 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	NLRP4	Q96MN2	994 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	PLA2G12B	Q9BX93	195 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289		E9PMD0	336 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	GSTA4	O15217	222 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	OSTN	P61366	133 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	FSCB	Q5H9T9	825 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	DSTYK	Q6XUX3	929 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	FRMD5	Q7Z6J6	570 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	DHX40	Q8IX18	779 aa	Known RBP	12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	NEDD1	Q8NHV4	660 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	CEP95	Q96GE4	821 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	TRAIP	Q9BWF2	469 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	ZWILCH	Q9H900	591 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	SNX24	Q9Y343	169 aa		12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	12.34	□□□□□ -0.43
SYNE2-208	ENST00000553289	KPNA7	A9QM74	516 aa		12.33	□□□□□ -0.43
SYNE2-208	ENST00000553289	GNAT1	P11488	350 aa		12.33	□□□□□ -0.43
SYNE2-208	ENST00000553289	PHEX	P78562	749 aa		12.33	□□□□□ -0.43
SYNE2-208	ENST00000553289	PDIA5	Q14554	519 aa		12.33	□□□□□ -0.43
SYNE2-208	ENST00000553289	PDCD2	Q16342	344 aa	Predicted RBP	12.33	□□□□□ -0.43
SYNE2-208	ENST00000553289	ZNF699	Q32M78	642 aa		12.33	□□□□□ -0.43
SYNE2-208	ENST00000553289	RABL6	Q3YEC7	729 aa	Predicted RBP	12.33	□□□□□ -0.43
SYNE2-208	ENST00000553289	OR6B3	Q8NGW1	331 aa		12.33	□□□□□ -0.43
SYNE2-208	ENST00000553289	GCOM2	Q9BZD3	368 aa	Predicted RBP	12.33	□□□□□ -0.43
SYNE2-208	ENST00000553289	NGRN	Q9NPE2	291 aa	Known RBP	12.33	□□□□□ -0.43
SYNE2-208	ENST00000553289	MRPL40	Q9NQ50	206 aa	Known RBP	12.33	□□□□□ -0.43
SYNE2-208	ENST00000553289	GJB4	Q9NTQ9	266 aa		12.33	□□□□□ -0.43
SYNE2-208	ENST00000553289	DDX56	Q9NY93	547 aa	Known RBP	12.33	□□□□□ -0.43
SYNE2-208	ENST00000553289	IP6K2	Q9UHH9	426 aa		12.33	□□□□□ -0.43
SYNE2-208	ENST00000553289	ADAM21	Q9UKJ8	722 aa		12.33	□□□□□ -0.43
SYNE2-208	ENST00000553289	KRT7	P08729	469 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	CYP19A1	P11511	503 aa	Predicted RBP	12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	TAP1	Q03518	808 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	NDUFAF2	Q8N183	169 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	SCG3	Q8WXD2	468 aa	Known RBP	12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	HSPH1	Q92598	858 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	TIPIN	Q9BVW5	301 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	INTS2	Q9H0H0	1204 aa	Known RBP	12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	ARHGEF40	Q8TER5	1519 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	ALK	Q9UM73	1620 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	SFI1	A8K8P3	1242 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	KIAA0391	O15091	583 aa	Known RBP	12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	RXRB	P28702	533 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	CASP2	P42575	452 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	BRINP3	Q76B58	766 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	CATSPER4	Q7RTX7	472 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	DCLK2	Q8N568	766 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	ZNF564	Q8TBZ8	553 aa	Predicted RBP	12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	GIPC2	Q8TF65	315 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	MTR	Q99707	1265 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	PMS2	P54278	862 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	GFPT1	Q06210	699 aa	Predicted RBP	12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	KIAA1841	Q6NSI8	718 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	MYLK4	Q86YV6	388 aa	Predicted RBP	12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	KSR1	Q8IVT5	923 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	MAML1	Q92585	1016 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	DYDC2	Q96IM9	177 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	CAPN11	Q9UMQ6	739 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	SLC8A2	Q9UPR5	921 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	SETBP1	Q9Y6X0	1596 aa		12.33	□□□□□ -0.44
SYNE2-208	ENST00000553289	RASA4B	C9J798	803 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	RASA4	O43374	803 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	HSPA4L	O95757	839 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	PRR29	P0C7W0	189 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	ZNF18	P17022	549 aa		12.32	□□□□□ -0.44

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