RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 TCP10Q12799 353 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 ADAM9Q13443 819 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 ZKSCAN8Q15776 578 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-214ENST00000552783 CNGA2Q16280 664 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 LONRF1Q17RB8 773 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 GALNTL6Q49A17 601 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 TCERG1LQ5VWI1 586 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 TTC27Q6P3X3 843 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 PTF1AQ7RTS3 328 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 ZNF804AQ7Z570 1209 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 SLFN11Q7Z7L1 901 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 GLYCTKQ8IVS8 523 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 LNX1Q8TBB1 728 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-214ENST00000552783 U2AF1L4Q8WU68 220 aaKnown RBP5.26□□□□□ -1.57
LIMA1-214ENST00000552783 DDX23Q9BUQ8 820 aaKnown RBP5.26□□□□□ -1.57
LIMA1-214ENST00000552783 C6orf50Q9HD87 102 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 SIX2Q9NPC8 291 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 INTS9Q9NV88 658 aaKnown RBP5.26□□□□□ -1.57
LIMA1-214ENST00000552783 DNAJC17Q9NVM6 304 aaKnown RBP5.26□□□□□ -1.57
LIMA1-214ENST00000552783 GRHL1Q9NZI5 618 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 NENFQ9UMX5 172 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 COG5Q9UP83 839 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 ANKRD36CQ5JPF3 1778 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 TCP11X1B4DZS4 312 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 LAD1O00515 517 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 ASAP2O43150 1006 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 EVI5O60447 810 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 LGR5O75473 907 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 GFPT2O94808 682 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 OAS1P00973 400 aaKnown RBP5.26□□□□□ -1.57
LIMA1-214ENST00000552783 PLCG2P16885 1265 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 STAT3P40763 770 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 BTDP43251 543 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 SCNN1DP51172 638 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 GTF2IP78347 998 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 AUHQ13825 339 aaKnown RBP5.26□□□□□ -1.57
LIMA1-214ENST00000552783 NFIXQ14938 502 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 TMEM266Q2M3C6 531 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 FAM26FQ5R3K3 315 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 ANKRD20A2Q5SQ80 823 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 ANKRD20A1Q5TYW2 823 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 C12orf60Q5U649 245 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 ANKRD20A3Q5VUR7 823 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 CAPRIN2Q6IMN6 1127 aaKnown RBP5.26□□□□□ -1.57
LIMA1-214ENST00000552783 EXOC3L1Q86VI1 746 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 FMNL3Q8IVF7 1028 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 GDAP1Q8TB36 358 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 SLC35G2Q8TBE7 412 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 KRT35Q92764 455 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 IQCDQ96DY2 449 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 PBKQ96KB5 322 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 CALR3Q96L12 384 aaKnown RBP5.26□□□□□ -1.57
LIMA1-214ENST00000552783 PWWP2AQ96N64 755 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 ERP44Q9BS26 406 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 PABPC3Q9H361 631 aaKnown RBP5.26□□□□□ -1.57
LIMA1-214ENST00000552783 MAGEF1Q9HAY2 307 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 ATP8A2Q9NTI2 1148 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 UTP11Q9Y3A2 253 aaKnown RBP5.26□□□□□ -1.57
LIMA1-214ENST00000552783 KIAA1551Q9HCM1 1747 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 ABCB11O95342 1321 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 POTEB3A0JP26 581 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 SPDYE5A6NIY4 337 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 POTECB2RU33 542 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 KIAA0391O15091 583 aaKnown RBP5.25□□□□□ -1.57
LIMA1-214ENST00000552783 TP73O15350 636 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 AKAP3O75969 853 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 SLURP2P0DP57 97 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 SLC16A2P36021 539 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 KCNJ1P48048 391 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 PSMC6P62333 389 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 DR1Q01658 176 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 RIPK1Q13546 671 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 PLS1Q14651 629 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 ARSHQ5FYA8 562 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 DCAF17Q5H9S7 520 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-214ENST00000552783 TRAPPC3LQ5T215 181 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 ARMC3Q5W041 872 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 TRIM68Q6AZZ1 485 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 POTEBQ6S5H4 581 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 CRELD2Q6UXH1 353 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-214ENST00000552783 SLC30A10Q6XR72 485 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 DGKHQ86XP1 1220 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 EIF1ADQ8N9N8 165 aaKnown RBP5.25□□□□□ -1.57
LIMA1-214ENST00000552783 LINC00116Q8NCU8 138 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 CENPTQ96BT3 561 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 EDEM3Q9BZQ6 932 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 BMP2KQ9NSY1 1161 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-214ENST00000552783 BCL9O00512 1426 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 DPPA5A6NC42 116 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 USP17L5A8MUK1 530 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 RGS16O15492 202 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-214ENST00000552783 NR2F2P24468 414 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 GNA11P29992 359 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 PTENP60484 403 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 BNIP1Q12981 228 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 MTMR3Q13615 1198 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 ITIH4Q14624 930 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 TMEM119Q4V9L6 283 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 HERC4Q5GLZ8 1057 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-214ENST00000552783 BARGINQ6ZT62 677 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms