RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 CLIC2O15247 247 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 DDX3YO15523 660 aaKnown RBP5.9□□□□□ -1.47
LIMA1-212ENST00000552491 GFPT2O94808 682 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 FGGP02679 453 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 H2AFZP0C0S5 128 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 MAP2K2P36507 400 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 SCTRP47872 440 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 ZNF211Q13398 564 aaPredicted RBP5.9□□□□□ -1.47
LIMA1-212ENST00000552491 BIRC3Q13489 604 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 IFI16Q16666 785 aaKnown RBP5.9□□□□□ -1.47
LIMA1-212ENST00000552491 KNOP1Q1ED39 458 aaKnown RBP5.9□□□□□ -1.47
LIMA1-212ENST00000552491 KRT71Q3SY84 523 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 ODF2Q5BJF6 829 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 AGBL2Q5U5Z8 902 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 TCERG1LQ5VWI1 586 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 SLC30A10Q6XR72 485 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 RUFY4Q6ZNE9 571 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 CCDC121Q6ZUS5 278 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 H2AFVQ71UI9 128 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 FRMD5Q7Z6J6 570 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 DAAM2Q86T65 1068 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 RPAINQ86UA6 219 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 PALB2Q86YC2 1186 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 SLC30A5Q8TAD4 765 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 GLG1Q92896 1179 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 CUL5Q93034 780 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 TLCD1Q96CP7 247 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 CCDC114Q96M63 670 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 CDCA7Q9BWT1 371 aaPredicted RBP5.9□□□□□ -1.47
LIMA1-212ENST00000552491 NT5C3AQ9H0P0 336 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 ADAM7Q9H2U9 754 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 PSTPIP2Q9H939 334 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 SUCLA2Q9P2R7 463 aaPredicted RBP5.9□□□□□ -1.47
LIMA1-212ENST00000552491 PNMA2Q9UL42 364 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 ATP8A1Q9Y2Q0 1164 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 BZW2Q9Y6E2 419 aaKnown RBP5.9□□□□□ -1.47
LIMA1-212ENST00000552491 PLIN4Q96Q06 1357 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 NRAPQ86VF7 1730 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 CNTNAP4Q9C0A0 1308 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 KDM3AQ9Y4C1 1321 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 CCDC188H7C350 402 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 CHUKO15111 745 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 GNPATO15228 680 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 EVI5O60447 810 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 KRT18P05783 430 aaKnown RBP5.89□□□□□ -1.47
LIMA1-212ENST00000552491 GRAPQ13588 217 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 MFSD14BQ5SR56 506 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 CYB5D1Q6P9G0 228 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 ZNF804AQ7Z570 1209 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 ZDHHC14Q8IZN3 488 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 GRAPLQ8TC17 118 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-212ENST00000552491 CCT6BQ92526 530 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 ARHGEF26Q96DR7 871 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 BORCS6Q96GS4 357 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 SLITRK6Q9H5Y7 841 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 ZDHHC18Q9NUE0 388 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 TAS2R14Q9NYV8 317 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 GCNT4Q9P109 453 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 TPX2Q9ULW0 747 aaKnown RBP5.89□□□□□ -1.47
LIMA1-212ENST00000552491 GAKO14976 1311 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 A0A0A6YYK5 440 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-212ENST00000552491 GOLGA6L7A0A1B0GV03 622 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 SFI1A8K8P3 1242 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 ZBTB5O15062 677 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 PPFIA2O75334 1257 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 RPS6KA4O75676 772 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 FLOT1O75955 427 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 UFL1O94874 794 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 NR3C1P04150 777 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 XRCC5P13010 732 aaKnown RBP5.89□□□□□ -1.47
LIMA1-212ENST00000552491 ABCB4P21439 1286 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 MRPL12P52815 198 aaKnown RBP5.89□□□□□ -1.47
LIMA1-212ENST00000552491 SNAP25P60880 206 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 CYP4A11Q02928 519 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 PPATQ06203 517 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 MTMR3Q13615 1198 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 PREPLQ4J6C6 727 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-212ENST00000552491 ERMARDQ5T6L9 678 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 ZDHHC24Q6UX98 284 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 GLYCTKQ8IVS8 523 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 KSR1Q8IVT5 923 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 PLPP6Q8IY26 295 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 SLC35G2Q8TBE7 412 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 ETNPPLQ8TBG4 499 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 CRYGNQ8WXF5 182 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 ALG3Q92685 438 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 ARHGEF1Q92888 912 aaKnown RBP5.89□□□□□ -1.47
LIMA1-212ENST00000552491 ZNF317Q96PQ6 595 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-212ENST00000552491 SYT11Q9BT88 431 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 RUSC1Q9BVN2 902 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 GPR88Q9GZN0 384 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 ACTR5Q9H9F9 607 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-212ENST00000552491 MCM8Q9UJA3 840 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 COG5Q9UP83 839 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 DAGLAQ9Y4D2 1042 aa5.89□□□□□ -1.47
LIMA1-212ENST00000552491 SPATA31A5Q5VU36 1347 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 SPATA31A7Q8IWB4 1347 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 PITPNM2Q9BZ72 1349 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 ZMYM2Q9UBW7 1377 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 PDXKO00764 312 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms