RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 C20orf173Q96LM9 149 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 CCDC140Q96MF4 163 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 BRIP1Q9BX63 1249 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 LGR4Q9BXB1 951 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 IFT22Q9H7X7 185 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 SLC52A2Q9HAB3 445 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 GPATCH2Q9NW75 528 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 ZIM2Q9NZV7 527 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 GPR160Q9UJ42 338 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 CEP131Q9UPN4 1083 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 APOBEC2Q9Y235 224 aaKnown RBP4.76□□□□□ -1.65
LIMA1-208ENST00000551691 SF3B6Q9Y3B4 125 aaKnown RBP4.76□□□□□ -1.65
LIMA1-208ENST00000551691 ZNF451Q9Y4E5 1061 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 KIAA0100Q14667 2235 aaKnown RBP4.76□□□□□ -1.65
LIMA1-208ENST00000551691 SCN11AQ9UI33 1791 aa4.76□□□□□ -1.65
LIMA1-208ENST00000551691 MUC3AQ02505 3323 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 MON2Q7Z3U7 1717 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 DNAJC8O75937 253 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-208ENST00000551691 CPP00450 1065 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 MYL1P05976 194 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 SRGNP10124 158 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 IARSP41252 1262 aaKnown RBP4.75□□□□□ -1.65
LIMA1-208ENST00000551691 GRIA2P42262 883 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 DLG4P78352 724 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 AMPD2Q01433 879 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 STAT4Q14765 748 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 NFE2Q16621 373 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-208ENST00000551691 TRIM61Q5EBN2 209 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 LCE5AQ5TCM9 118 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 PIK3R6Q5UE93 754 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 CWF19L1Q69YN2 538 aaKnown RBP4.75□□□□□ -1.65
LIMA1-208ENST00000551691 PRR5LQ6MZQ0 368 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 TSPYL5Q86VY4 417 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-208ENST00000551691 TRIM59Q8IWR1 403 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 RCC1LQ96I51 464 aaKnown RBP4.75□□□□□ -1.65
LIMA1-208ENST00000551691 WNK4Q96J92 1243 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 COX4I2Q96KJ9 171 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 ZDHHC15Q96MV8 337 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 KRTAP4-5Q9BYR2 181 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 PUS7LQ9H0K6 701 aaKnown RBP4.75□□□□□ -1.65
LIMA1-208ENST00000551691 TRIT1Q9H3H1 467 aaKnown RBP4.75□□□□□ -1.65
LIMA1-208ENST00000551691 GP6Q9HCN6 339 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 CGGBP1Q9UFW8 167 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-208ENST00000551691 SUSD2Q9UGT4 822 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 NARFQ9UHQ1 456 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 ZKSCAN5Q9Y2L8 839 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 EMC9Q9Y3B6 208 aa4.75□□□□□ -1.65
LIMA1-208ENST00000551691 COL4A5P29400 1685 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 BLACEA4D250 179 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 GPR39O43194 453 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 TBX1O43435 398 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 PSPNO60542 156 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 EFEMP2O95967 443 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 SRFP11831 508 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 HOXC12P31275 282 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 GNALP38405 381 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 RAB27AP51159 221 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 RHBDL3P58872 404 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 OCRLQ01968 901 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 GUCY1A3Q02108 690 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 PIN1Q13526 163 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-208ENST00000551691 MTMR1Q13613 665 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 ZNF460Q14592 562 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 ANKRD39Q53RE8 183 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 CCDC93Q567U6 631 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 GTF2IRD2BQ6EKJ0 949 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 STYK1Q6J9G0 422 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 STRA8Q7Z7C7 330 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 GTF2IRD2Q86UP8 949 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 ZC3H7AQ8IWR0 971 aaKnown RBP4.74□□□□□ -1.65
LIMA1-208ENST00000551691 RAVER1Q8IY67 606 aaKnown RBP4.74□□□□□ -1.65
LIMA1-208ENST00000551691 IFNL2Q8IZJ0 200 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 FIBCD1Q8N539 461 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 PDZD8Q8NEN9 1154 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 SLC7A14Q8TBB6 771 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 PMM1Q92871 262 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 BRF1Q92994 677 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 OSBP2Q969R2 916 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 CHMP4CQ96CF2 233 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 INTS4Q96HW7 963 aaKnown RBP4.74□□□□□ -1.65
LIMA1-208ENST00000551691 KREMEN1Q96MU8 473 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 RPS6KC1Q96S38 1066 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 YIPF4Q9BSR8 244 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 ASPNQ9BXN1 380 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 ASPSCR1Q9BZE9 553 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 CABP5Q9NP86 173 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 DIS3Q9Y2L1 958 aaKnown RBP4.74□□□□□ -1.65
LIMA1-208ENST00000551691 GPR55Q9Y2T6 319 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-208ENST00000551691 COMMD10Q9Y6G5 202 aa4.74□□□□□ -1.65
LIMA1-208ENST00000551691 SOS1Q07889 1333 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-208ENST00000551691 PAPPA2Q9BXP8 1791 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 DLEC1Q9Y238 1755 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 ANKRD31Q8N7Z5 1873 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 TCERG1O14776 1098 aaKnown RBP4.73□□□□□ -1.65
LIMA1-208ENST00000551691 ZEB2O60315 1214 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 U2AF1L5P0DN76 240 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-208ENST00000551691 CYP19A1P11511 503 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-208ENST00000551691 POU3F3P20264 500 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-208ENST00000551691 SDHBP21912 280 aa4.73□□□□□ -1.65
LIMA1-208ENST00000551691 U2AF1Q01081 240 aaKnown RBP eCLIP4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms