RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 DSC3Q14574 896 aa18.34■□□□□ 0.53
VPS29-207ENST00000549970 LEXMQ3ZCV2 418 aa18.34■□□□□ 0.53
VPS29-207ENST00000549970 SPOUT1Q5T280 376 aaKnown RBP18.34■□□□□ 0.53
VPS29-207ENST00000549970 PLA2G4FQ68DD2 849 aa18.34■□□□□ 0.53
VPS29-207ENST00000549970 ZNF710Q8N1W2 664 aa18.34■□□□□ 0.53
VPS29-207ENST00000549970 KLHL23Q8NBE8 558 aa18.34■□□□□ 0.53
VPS29-207ENST00000549970 HAS1Q92839 578 aa18.34■□□□□ 0.53
VPS29-207ENST00000549970 P2RX5Q93086 422 aa18.34■□□□□ 0.53
VPS29-207ENST00000549970 CEP89Q96ST8 783 aa18.34■□□□□ 0.53
VPS29-207ENST00000549970 NAP1L4Q99733 375 aaKnown RBP18.34■□□□□ 0.53
VPS29-207ENST00000549970 ATP6V0A4Q9HBG4 840 aa18.34■□□□□ 0.53
VPS29-207ENST00000549970 H3BQ06 376 aaPredicted RBP18.33■□□□□ 0.52
VPS29-207ENST00000549970 CSDE1O75534 798 aaKnown RBP18.33■□□□□ 0.52
VPS29-207ENST00000549970 ITGB1P05556 798 aa18.33■□□□□ 0.52
VPS29-207ENST00000549970 FGFR1P11362 822 aa18.33■□□□□ 0.52
VPS29-207ENST00000549970 DARSP14868 501 aaKnown RBP18.33■□□□□ 0.52
VPS29-207ENST00000549970 ZSCAN20P17040 1043 aaPredicted RBP18.33■□□□□ 0.52
VPS29-207ENST00000549970 ANO5Q75V66 913 aa18.33■□□□□ 0.52
VPS29-207ENST00000549970 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.33■□□□□ 0.52
VPS29-207ENST00000549970 PABPC5Q96DU9 382 aaKnown RBP18.33■□□□□ 0.52
VPS29-207ENST00000549970 TMEM161AQ9NX61 479 aa18.33■□□□□ 0.52
VPS29-207ENST00000549970 CLDND1Q9NY35 253 aa18.33■□□□□ 0.52
VPS29-207ENST00000549970 HCSTQ9UBK5 93 aa18.33■□□□□ 0.52
VPS29-207ENST00000549970 IGKV6-21A0A0C4DH24 114 aa18.32■□□□□ 0.52
VPS29-207ENST00000549970 TBX3O15119 743 aa18.32■□□□□ 0.52
VPS29-207ENST00000549970 DNAJB1P25685 340 aa18.32■□□□□ 0.52
VPS29-207ENST00000549970 QARSP47897 775 aaKnown RBP18.32■□□□□ 0.52
VPS29-207ENST00000549970 DNM2P50570 870 aa18.32■□□□□ 0.52
VPS29-207ENST00000549970 FAM189BP81408 668 aa18.32■□□□□ 0.52
VPS29-207ENST00000549970 ST3GAL1Q11201 340 aa18.32■□□□□ 0.52
VPS29-207ENST00000549970 CAMK1Q14012 370 aa18.32■□□□□ 0.52
VPS29-207ENST00000549970 NAALADL2Q58DX5 795 aa18.32■□□□□ 0.52
VPS29-207ENST00000549970 NCAPH2Q6IBW4 605 aa18.32■□□□□ 0.52
VPS29-207ENST00000549970 SPPL3Q8TCT6 385 aa18.32■□□□□ 0.52
VPS29-207ENST00000549970 NEK9Q8TD19 979 aa18.32■□□□□ 0.52
VPS29-207ENST00000549970 TNFRSF25Q93038 417 aa18.32■□□□□ 0.52
VPS29-207ENST00000549970 ELAC1Q9H777 363 aaKnown RBP18.32■□□□□ 0.52
VPS29-207ENST00000549970 SUCLA2Q9P2R7 463 aaPredicted RBP18.32■□□□□ 0.52
VPS29-207ENST00000549970 BTBD18B2RXH4 712 aa18.31■□□□□ 0.52
VPS29-207ENST00000549970 DKC1O60832 514 aaKnown RBP eCLIP18.31■□□□□ 0.52
VPS29-207ENST00000549970 MAFO75444 373 aaPredicted RBP18.31■□□□□ 0.52
VPS29-207ENST00000549970 P4HBP07237 508 aaKnown RBP18.31■□□□□ 0.52
VPS29-207ENST00000549970 IL9P15248 144 aa18.31■□□□□ 0.52
VPS29-207ENST00000549970 NPEPPSP55786 919 aa18.31■□□□□ 0.52
VPS29-207ENST00000549970 HYAL1Q12794 435 aa18.31■□□□□ 0.52
VPS29-207ENST00000549970 TRIM29Q14134 588 aa18.31■□□□□ 0.52
VPS29-207ENST00000549970 PTCRAQ6ISU1 281 aaPredicted RBP18.31■□□□□ 0.52
VPS29-207ENST00000549970 RHPN2Q8IUC4 686 aa18.31■□□□□ 0.52
VPS29-207ENST00000549970 RNF169Q8NCN4 708 aa18.31■□□□□ 0.52
VPS29-207ENST00000549970 POF1BQ8WVV4 589 aa18.31■□□□□ 0.52
VPS29-207ENST00000549970 GCOM2Q9BZD3 368 aaPredicted RBP18.31■□□□□ 0.52
VPS29-207ENST00000549970 IGFLR1Q9H665 355 aa18.31■□□□□ 0.52
VPS29-207ENST00000549970 CYP26B1Q9NR63 512 aa18.31■□□□□ 0.52
VPS29-207ENST00000549970 TYW1Q9NV66 732 aaKnown RBP18.31■□□□□ 0.52
VPS29-207ENST00000549970 WRAP73Q9P2S5 460 aaPredicted RBP18.31■□□□□ 0.52
VPS29-207ENST00000549970 PCDHB12Q9Y5F1 795 aa18.31■□□□□ 0.52
VPS29-207ENST00000549970 BDP1A6H8Y1 2624 aa18.31■□□□□ 0.52
VPS29-207ENST00000549970 A0A087WZ62 844 aa18.3■□□□□ 0.52
VPS29-207ENST00000549970 BAG4O95429 457 aaKnown RBP18.3■□□□□ 0.52
VPS29-207ENST00000549970 GTF2F1P35269 517 aaKnown RBP eCLIP18.3■□□□□ 0.52
VPS29-207ENST00000549970 IRS1P35568 1242 aa18.3■□□□□ 0.52
VPS29-207ENST00000549970 CDC42EP1Q00587 391 aa18.3■□□□□ 0.52
VPS29-207ENST00000549970 COL19A1Q14993 1142 aa18.3■□□□□ 0.52
VPS29-207ENST00000549970 EPHA7Q15375 998 aa18.3■□□□□ 0.52
VPS29-207ENST00000549970 ECHDC2Q86YB7 292 aa18.3■□□□□ 0.52
VPS29-207ENST00000549970 DIS3L2Q8IYB7 885 aaKnown RBP18.3■□□□□ 0.52
VPS29-207ENST00000549970 SLFN12Q8IYM2 578 aa18.3■□□□□ 0.52
VPS29-207ENST00000549970 CEP170P1Q96L14 293 aa18.3■□□□□ 0.52
VPS29-207ENST00000549970 JPH2Q9BR39 696 aaPredicted RBP18.3■□□□□ 0.52
VPS29-207ENST00000549970 FDXACB1Q9BRP7 624 aaPredicted RBP18.3■□□□□ 0.52
VPS29-207ENST00000549970 LXNQ9BS40 222 aa18.3■□□□□ 0.52
VPS29-207ENST00000549970 AAASQ9NRG9 546 aa18.3■□□□□ 0.52
VPS29-207ENST00000549970 RGL1Q9NZL6 768 aa18.3■□□□□ 0.52
VPS29-207ENST00000549970 PLXNA4Q9HCM2 1894 aa18.3■□□□□ 0.52
VPS29-207ENST00000549970 HOXA2O43364 376 aa18.29■□□□□ 0.52
VPS29-207ENST00000549970 NCK2O43639 380 aa18.29■□□□□ 0.52
VPS29-207ENST00000549970 CYP4A11Q02928 519 aa18.29■□□□□ 0.52
VPS29-207ENST00000549970 SPIRE1Q08AE8 756 aa18.29■□□□□ 0.52
VPS29-207ENST00000549970 KSR1Q8IVT5 923 aa18.29■□□□□ 0.52
VPS29-207ENST00000549970 CCDC83Q8IWF9 413 aa18.29■□□□□ 0.52
VPS29-207ENST00000549970 ABI1Q8IZP0 508 aa18.29■□□□□ 0.52
VPS29-207ENST00000549970 ZNF579Q8NAF0 562 aaKnown RBP18.29■□□□□ 0.52
VPS29-207ENST00000549970 DYDC2Q96IM9 177 aa18.29■□□□□ 0.52
VPS29-207ENST00000549970 NLRP4Q96MN2 994 aa18.29■□□□□ 0.52
VPS29-207ENST00000549970 TMEM117Q9H0C3 514 aa18.29■□□□□ 0.52
VPS29-207ENST00000549970 BMP2KQ9NSY1 1161 aaPredicted RBP18.29■□□□□ 0.52
VPS29-207ENST00000549970 RNF19AQ9NV58 838 aa18.29■□□□□ 0.52
VPS29-207ENST00000549970 GRXCR2A6NFK2 248 aa18.28■□□□□ 0.52
VPS29-207ENST00000549970 WNT7AO00755 349 aa18.28■□□□□ 0.52
VPS29-207ENST00000549970 SFPQP23246 707 aaKnown RBP eCLIP18.28■□□□□ 0.52
VPS29-207ENST00000549970 YWHABP31946 246 aaKnown RBP18.28■□□□□ 0.52
VPS29-207ENST00000549970 LTBRP36941 435 aa18.28■□□□□ 0.52
VPS29-207ENST00000549970 POLGP54098 1239 aaPredicted RBP18.28■□□□□ 0.52
VPS29-207ENST00000549970 GUCY1B3Q02153 619 aa18.28■□□□□ 0.52
VPS29-207ENST00000549970 CTTNQ14247 550 aaKnown RBP18.28■□□□□ 0.52
VPS29-207ENST00000549970 CALCRLQ16602 461 aa18.28■□□□□ 0.52
VPS29-207ENST00000549970 CTC1Q2NKJ3 1217 aa18.28■□□□□ 0.52
VPS29-207ENST00000549970 PUS10Q3MIT2 529 aaKnown RBP18.28■□□□□ 0.52
VPS29-207ENST00000549970 ADGRD2Q7Z7M1 963 aa18.28■□□□□ 0.52
VPS29-207ENST00000549970 ZNF410Q86VK4 478 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms