RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 TMX1Q9H3N1 280 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 JADE2Q9NQC1 790 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 SAMSN1Q9NSI8 373 aaKnown RBP6.86□□□□□ -1.31
SYNE1-239ENST00000545694 PANK4Q9NVE7 773 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 FBXO28Q9NVF7 368 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 NRBP1Q9UHY1 535 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 KCNG1Q9UIX4 513 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 COL4A3BPQ9Y5P4 624 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 UBIAD1Q9Y5Z9 338 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 OTOFQ9HC10 1997 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 A0A0G2JMZ2 1700 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 PFASO15067 1338 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 LGALS16A8MUM7 142 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 AKR1B15C9JRZ8 316 aaPredicted RBP6.85□□□□□ -1.31
SYNE1-239ENST00000545694 IPO5O00410 1097 aaKnown RBP6.85□□□□□ -1.31
SYNE1-239ENST00000545694 EIF3DO15371 548 aaKnown RBP eCLIP6.85□□□□□ -1.31
SYNE1-239ENST00000545694 MED24O75448 989 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 USP2O75604 605 aaPredicted RBP6.85□□□□□ -1.31
SYNE1-239ENST00000545694 P4HBP07237 508 aaKnown RBP6.85□□□□□ -1.31
SYNE1-239ENST00000545694 SPATA31C1P0DKV0 1188 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 MAPTP10636 758 aaKnown RBP6.85□□□□□ -1.31
SYNE1-239ENST00000545694 CASP1P29466 404 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 CCND2P30279 289 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 PBX1P40424 430 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 JAK3P52333 1124 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 COPB1P53618 953 aaKnown RBP6.85□□□□□ -1.31
SYNE1-239ENST00000545694 STX17P56962 302 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 SNAP25P60880 206 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 RPS6P62753 249 aaKnown RBP6.85□□□□□ -1.31
SYNE1-239ENST00000545694 CCZ1BP86790 482 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 CCZ1P86791 482 aaPredicted RBP6.85□□□□□ -1.31
SYNE1-239ENST00000545694 STK4Q13043 487 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 COASYQ13057 564 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 KRT31Q15323 416 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 NFIL3Q16649 462 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 EDRF1Q3B7T1 1238 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 FIGNQ5HY92 759 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 C9orf131Q5VYM1 1079 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 NCAPH2Q6IBW4 605 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 FASTKD5Q7L8L6 764 aaKnown RBP6.85□□□□□ -1.31
SYNE1-239ENST00000545694 APTXQ7Z2E3 356 aaKnown RBP6.85□□□□□ -1.31
SYNE1-239ENST00000545694 GPBP1Q86WP2 473 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 ANKRD13AQ8IZ07 590 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 KIAA0895Q8NCT3 520 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 REPS2Q8NFH8 660 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 NSUN6Q8TEA1 469 aaKnown RBP6.85□□□□□ -1.31
SYNE1-239ENST00000545694 MED15Q96RN5 788 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 PLIN2Q99541 437 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 MPHOSPH6Q99547 160 aaKnown RBP6.85□□□□□ -1.31
SYNE1-239ENST00000545694 P2RX7Q99572 595 aaKnown RBP6.85□□□□□ -1.31
SYNE1-239ENST00000545694 SPOCK3Q9BQ16 436 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 SENP7Q9BQF6 1050 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 EIF2AK1Q9BQI3 630 aaKnown RBP6.85□□□□□ -1.31
SYNE1-239ENST00000545694 SRRTQ9BXP5 876 aaKnown RBP6.85□□□□□ -1.31
SYNE1-239ENST00000545694 EDEM3Q9BZQ6 932 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 ACAD9Q9H845 621 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 OLFML3Q9NRN5 406 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 RNF146Q9NTX7 359 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 CGNQ9P2M7 1197 aaKnown RBP6.85□□□□□ -1.31
SYNE1-239ENST00000545694 DBR1Q9UK59 544 aaKnown RBP6.85□□□□□ -1.31
SYNE1-239ENST00000545694 FAM184BQ9ULE4 1060 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 ODF2LQ9ULJ1 636 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 GDAQ9Y2T3 454 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 PAXBP1Q9Y5B6 917 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 SSC5DA1L4H1 1573 aa6.85□□□□□ -1.31
SYNE1-239ENST00000545694 ZNFX1Q9P2E3 1918 aaKnown RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 ASTN2O75129 1339 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 NFASCO94856 1347 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 A0A0G2JLL6 359 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 GLTPD2A6NH11 291 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 WDR64B1ANS9 1081 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 OIP5O43482 229 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 TBCAO75347 108 aaKnown RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 DDNO94850 711 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 SLITRK3O94933 977 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 SLC25A27O95847 323 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 GNRH1P01148 92 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 IDEP14735 1019 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 CYP11B2P19099 503 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 GUCY2CP25092 1073 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 RPL13P26373 211 aaKnown RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 STAT3P40763 770 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 HMGCS2P54868 508 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 SNRPFP62306 86 aaKnown RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 SNRPNP63162 240 aaKnown RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 FKBP1BP68106 108 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 PPIL2Q13356 520 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 MTMR1Q13613 665 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 MYBPC2Q14324 1141 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 HSP90AA2PQ14568 343 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 PGM5Q15124 567 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 BMT2Q1RMZ1 405 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 GNPTABQ3T906 1256 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 HERC4Q5GLZ8 1057 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 DNTTIP2Q5QJE6 756 aaKnown RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 FKBP15Q5T1M5 1219 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 ARHGEF16Q5VV41 709 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 SNRNP48Q6IEG0 339 aaKnown RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 ZNF746Q6NUN9 644 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 ARMCX5Q6P1M9 558 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms