RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 SPECC1LQ69YQ0 1117 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 SPATA2LQ8IUW3 424 aaPredicted RBP9.56□□□□□ -0.88
VPS13D-212ENST00000543766 OTUD7AQ8TE49 926 aaPredicted RBP9.56□□□□□ -0.88
VPS13D-212ENST00000543766 SUCLG2Q96I99 432 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 CMTM3Q96MX0 182 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 TPK1Q9H3S4 243 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 BRD7Q9NPI1 651 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 MRPL39Q9NYK5 338 aaKnown RBP9.56□□□□□ -0.88
VPS13D-212ENST00000543766 ZFATQ9P243 1243 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 PHLPP2Q6ZVD8 1323 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 GOLGA8OA6NCC3 632 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 GOLGA8NF8WBI6 632 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 SNX4O95219 450 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 OR5F1O95221 314 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 GABREP78334 506 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 PDE1BQ01064 536 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 ALFQ53S48 1182 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 FAM133BQ5BKY9 247 aaKnown RBP9.56□□□□□ -0.88
VPS13D-212ENST00000543766 FAM83BQ5T0W9 1011 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 SPATA1Q5VX52 437 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 PCNX4Q63HM2 1172 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 SEPT1Q8WYJ6 367 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 TSGA13Q96PP4 275 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 LLPHQ9BRT6 129 aaKnown RBP9.56□□□□□ -0.88
VPS13D-212ENST00000543766 ATP11BQ9Y2G3 1177 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 L3MBTL1Q9Y468 752 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 ZNF335Q9H4Z2 1342 aaPredicted RBP9.56□□□□□ -0.88
VPS13D-212ENST00000543766 KIAA0232Q92628 1395 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 GOLGA8CPA6NN73 597 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 DYNC1LI2O43237 492 aaPredicted RBP9.55□□□□□ -0.88
VPS13D-212ENST00000543766 ARIH2O95376 493 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 OXSR1O95747 527 aaPredicted RBP9.55□□□□□ -0.88
VPS13D-212ENST00000543766 FYNP06241 537 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 S100A6P06703 90 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 PSMA3P25788 255 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 CDKN1CP49918 316 aaPredicted RBP9.55□□□□□ -0.88
VPS13D-212ENST00000543766 C21orf58P58505 322 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 GOLGA8FQ08AF8 430 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 GOLGA8DPQ0D2H9 430 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 WLSQ5T9L3 541 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 HOMER1Q86YM7 354 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 GPIHBP1Q8IV16 184 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 MAML3Q96JK9 1138 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 PDE11AQ9HCR9 933 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 SLC35C2Q9NQQ7 365 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 USP40Q9NVE5 1235 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 KBTBD4Q9NVX7 518 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 SPEF1Q9Y4P9 236 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 DGKIO75912 1065 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 KRT4P19013 534 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 PCK1P35558 622 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 ACCSLQ4AC99 568 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 ANGPTL8Q6UXH0 198 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 TMC4Q7Z404 712 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 ANKRD35Q8N283 1001 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 IQCDQ96DY2 449 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 RHBGQ9H310 441 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 OCEL1Q9H607 264 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 HOMER2Q9NSB8 354 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 HESX1Q9UBX0 185 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 ZNF148Q9UQR1 794 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 N4BP2Q86UW6 1770 aaPredicted RBP9.55□□□□□ -0.88
VPS13D-212ENST00000543766 ZSCAN5BA6NJL1 495 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 EFCAB8A8MWE9 144 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 ATXN8OSP0DMR3 200 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 TMPOP42166 694 aaKnown RBP9.55□□□□□ -0.88
VPS13D-212ENST00000543766 CHMP4BP1P59074 171 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 OLR1P78380 273 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 TRIM28Q13263 835 aaKnown RBP9.55□□□□□ -0.88
VPS13D-212ENST00000543766 CCDC14Q49A88 953 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 INPP5DQ92835 1189 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 PPP1R13BQ96KQ4 1090 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 FAM20AQ96MK3 541 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 C19orf43Q9BQ61 176 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 MOV10L1Q9BXT6 1211 aaKnown RBP9.55□□□□□ -0.88
VPS13D-212ENST00000543766 PSTPIP2Q9H939 334 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 CRLF2Q9HC73 371 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 GMIPQ9P107 970 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 ANGPTL2Q9UKU9 493 aa9.55□□□□□ -0.88
VPS13D-212ENST00000543766 MON2Q7Z3U7 1717 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 CPA3P15088 417 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 PCYT1AP49585 367 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 LAMC2Q13753 1193 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 ANO6Q4KMQ2 910 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 INTS8Q75QN2 995 aaKnown RBP9.54□□□□□ -0.88
VPS13D-212ENST00000543766 RIC3Q7Z5B4 369 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 METTL3Q86U44 580 aaKnown RBP9.54□□□□□ -0.88
VPS13D-212ENST00000543766 MAB21L3Q8N8X9 362 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 BCAS4Q8TDM0 211 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 TNFRSF25Q93038 417 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 RADILQ96JH8 1075 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 NUP85Q9BW27 656 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.54□□□□□ -0.88
VPS13D-212ENST00000543766 STAG3Q9UJ98 1225 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 DIP2AQ14689 1571 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 TECPR2O15040 1411 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 ATP7BP35670 1465 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 PRR23AA6NEV1 266 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 F8W810 466 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 ABLIM1O14639 778 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms